barSeed - Barley Seed Development Database

Probe CUST_37871_PI390587928

Source Contig U35_824

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37871_PI390587928	Hv_44K_v2	AGCATCAGAGCATGGCGTAAGTTGTAACTATGGTTACTTCTCCTGAGAATCTCAATAAAA	1597	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.742	0.632	1.345	1.198
Raw	2.710	2.947	3.456	4.354	2.867	2.842

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376513	1152	6e-24	1070 - 1128	100	59 / 59	plus	ABC02517 ABC02518 ABC02519 ABC04174 ABC07001 ABC16814
MLOC	MLOC_6800.1	749	3e-22	576 - 634	98	58 / 59	plus	ABC02517 ABC02518 ABC02519 ABC04174
JLOC1	JLOC1_4448.1	691	1e-22	576 - 634	98	58 / 59	plus
Harvest21	ABC02520	1698	5e-23	1599 - 1657	98	58 / 59	plus
Harvest21	ABC02518	1196	6e-22	1057 - 1113	98	56 / 57	plus	ABC02518
Harvest35	U35_824	1657	3e-25	1598 - 1657	100	60 / 60	plus
Harvest35	U35_822	1203	6e-22	1064 - 1120	98	56 / 57	plus

Contig Sequence (1657 bp)

>U35_824 1657 Hv_44K_v2
GGCGGCCTTCAATCGATTCAGTGCTTGTACTCGTCCTAGATAATTTATGAATCTGGTGTT
TTTTATTGTTTTTTATATTTATTGTACTATCATGATTGGAAAATGAATAAATCAAAAGTT
TCCCCGCAAAGAAAAAAATATTGCTAGGTTGGCATGATCAAAGGTATCCGAGAGCGGCGA
GGGACACACCCACGGAAATCTAGCCCGAACGAGAGTGAGTAGTGTGGACAGCGTGCACGA
TTCTCCATTTCAAGCAGAAGGGAGAGAGTTGCGTTCCATGACGCCCGTCCATGAATGCCC
TGCGTCATCTATGGACTAAAATTCCACATACGTGCATACCAGCACACGCTCTCGATCATG
CATGCCCAACTGCTCGCCGCCGTACCTCTCGACCGGATCTAAGCCGCCAAGTTGATCCGT
CGATCGCATGACGATCGAGCAGCTGGTAGATAGATAGATAGATATCGATCATGGCGATCG
ATCGAGTAGGGCGACACCTACATATATAAAGAGCTGCACTCCCCACCGCTTCTTTCACAC
ACACACACACCACTAGCTACACTGTTGGACCACAAGATAGCGGTTCGTTGCCACGCACGA
TGAGAGCGTTCGTGTTGTTCGCCGTGGTTGCCATGGCGGCCACCATGGCCGTCGCCGAGC
AGTGCGGCTCGCAGGCCGGCGGGGCGACCTGCCCCAACTGCCTCTGCTGCAGCCGCTTCG
GTTGGTGCGGCTCCACCCCCTACTGCGGCGATGGATGCCAGAGCCAGTGCTCCGGCTGCG
GCGGCGGCAGCACGCCCGTCACGCCCACCCCATCGGGCGGCGGCGGCGTGTCCTCCATCG
TCTCACGCGCCCTCTTCGACCGCATGCTGCTGCACCGCAACGACGGCGCCTGCCAGGCCA
AGGGCTTCTACACCTACGACGCCTTCGTCGCCGCCGCATCCGCCTTCCGGGGCTTCGGCA
CCACCGGCGGCACCGACACCCGGAAGCGCGAGGTGGCCGCCTTCCTGGCCCAGACCTCCC
ACGAGACCACCGGCGGGTGGGCGACGGCACCGGACGGAGCTTTCGCCTGGGGCTACTGCT
TCAAGCAGGAGCGTGGCGCCACCTCCAACTACTGCACTCCGAGCGCGCAGTGGCCGTGCG
CCCCAGGGAAGAGCTACTACGGCCGTGGGCCGATCCAGCTCTCCCACAACTACAACTACG
GGCCTGCGGGCCGGGCTATAGGGGTCGATCTGCTGCGCAACCCGGACCTGGTGGCCACGG
ACCCGACCGTGTCGTTTAAGACTGCGATGTGGTTTTGGATGACGGCCCAGGCGCCAAAAC
CGTCGAGCCATGCTGTGATCACGGGCCAGTGGAGCCCATCAGGGACGGACCGGGCCGCGG
GGCGGGTGCCTGGGTTTGGCGTGATCACCAACATCGTCAACGGCGGGATCGAGTGCGGGC
ATGGGCAGGACAGTCGAGTCGCCGATCGGATCGGGTTTTACAAGCGCTACTGCGACATCC
TCGGCGTTGGCTACGGCAACAACCTCGACTGCTACAGCCAGAGGCCCTTCGCTTAACTAA
TTAGTTATACATAATCCCGCACACAAAATTCAATAAGAGCATCAGAGCATGGCGTAAGTT
GTAACTATGGTTACTTCTCCTGAGAATCTCAATAAAA

Homology of Contig U35_824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51060.1	350	5e-144	protein\|CHIT8 - Chitinase family protein precursor, expressed
Brachypodium v1_2	Bradi1g29887.1	321	3e-166
Arabidopsis v10	AT3G12500.1	335	3e-131	\| Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB \| basic chitinase \| chr3:3962501-3963984 REVERSE LENGTH=335