barSeed - Barley Seed Development Database

Probe CUST_37135_PI390587928

Source Contig U35_569

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37135_PI390587928	Hv_44K_v2	TATTGCTTCTTAAAATCATGGACTATGTTACTCAACGAACCGTTTGATGGATGACCATGG	488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54272.1	1455	2e-24	1374 - 1433	100	60 / 60	plus	ABC02636 ABC02638 ABC02639 ABC02640 ABC02642 ABC45343
JLOC1	JLOC1_34927.1	1642	8e-25	1303 - 1362	100	60 / 60	plus
Harvest21	ABC02638	587	3e-25	489 - 548	100	60 / 60	plus	ABC02638
Harvest35	U35_569	548	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_569 548 Hv_44K_v2
GATCAGGTCAGCGGGCTCCAGCTCCTGAAAGACGGGGCATGGGTGGACGTGCCGCCCATG
CGTCACGCCGTCGTCGTCAACATCGGCGACCAGCTGGAGGTGATCACCAACGGGCGGTAC
AAGAGCGTCATGCACCGCGTGCTCACCCGCCCTGACGGCAACCGCATGTCCATAGCCTCA
TTCTACAACCCCGGCGCCGACGCCGTCATATTCCCGGCCCCAGCGCTTATGGGTGCTGCC
GAAGCCGCTGGGAAGAACGAGGGCGAGGAGGGCACCGCCGAGTACCCGAGCTTCGTGTTC
GAGGACTACATGAACCTGTACTTGCGCCACAAGTTCGAGGCCAAGGAGCCGCGCTTCGAG
GCCATGAAGGTGGATGCCGCGCCCATCGCCACCGTGTGAGCCCGTACGCGCTCGGACCCG
GACAAGAGTATTTCTAGCCGTGTGTTTTCTTTTCTTGTGGGAGTGACATGCATCCGGCCG
GTTAACTTTATTGCTTCTTAAAATCATGGACTATGTTACTCAACGAACCGTTTGATGGAT
GACCATGG

Homology of Contig U35_569 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53180.3	284	2e-60	protein\|1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
Brachypodium v1_2	Bradi3g57620.1	334	1e-56
Arabidopsis v10	None