barSeed - Barley Seed Development Database

Probe ABC02642

Source Contig ABC02642

barSeed

Links

Affymetrix Source Sequence (1306 bp)

>ABC02642 1306
GGCAGATAACAACCATCTCATTGTAGAGAGATCAGATCAGAGCCTACCTAGCTTCTCAGT
TCTCACTCATCTTCGCCCAAGAATTTCACCATGGTTGTCCCGGTCATCGACTTCTCGAAG
CTCGACGGCGCCGAGAGGGCGGAGACGATGGCGCAGATCGCCGACGGCTGCGAGAACTGG
GGCTTCTTCCAGCTGGTGAACCACGGCATCCCCTTGGAGCTTCTTGATCGCGTCAAGAAG
GTGTGCTCCGAGAGCTACCGCCTGCGGGAGGCCGCGTTCCGGTCGTCGGAGCCGGTGCAG
ACACTGGAGAGGCTCGTGGAGGCGGAGCGGCGCGGCGAGGCGGTGGCGCCGGTGGACGAC
ATGGACTGGGAGGACATCTTCTACCTCCACGACGACAACCAGTGGCCCTCCGACCCGCCG
GCCTTCAAGGAGACCATGCGGGAGTACCGCGCCGAGCTCAAGAAGCTCGCGGAGCGGGTC
ATGGAGGCCATGGACGAGAACCTCGGCCTGGACAAGGGCCGCATGAAGGCCGCCTTCACC
GGCGACGGCCTCCACGCACCATTCTTCGGCACCAAGGTCAGCCACTACCCGCCGTGCCCG
CGCCCAGACCTCATCACCGGACTCCGCGCGCACACCGACGCCGGCGGCGTCATCCTGCTG
TTCCAGGACGACAAGGTCGGCGGCCTTGAGGTGCTCAAGGATGGCCAGTGGCTGGACGTG
CAGCCGCTCCCCGACGCCATCGTGGTCAACACCGGCGACCAGGTGGAGGTGCTCAGCAAC
GGCCGCTACCGCAGCGCTTGGCACCGCGTCCTGCCCATGCGCAACGGCAACCGCCGCTCC
ATCGCGTCCTTCTACAACCCGGCGTTCGAGGCGGCCATCTCGCCGGCGGTGGGCGAAGGC
GGCGCCGCCGCGTACCCGGACTACGTGTTCGGAGATTACATGGACGTGTACAACAAGCAG
AAGTTCGATGCCAAGGAGCCAAGATTCGAGGCCGTCAAGGCGCCGAAGTCAGCTTAATAA
GCTTATAATCAAGGAGATTAAAAGAAAATTATTTACCTATTAGCTTGCTTTGTTTTACAA
TGAAGAAAACTATGTTTTTTTGGAGTTTATTTAGACGCGTAACAATGTGATGTGGGGATA
CTTATGATTGGTTCGGTGTGAAATAATTGGAAAATGAAATACTGTGGATTTTTCATTGGA
AGTATCTGTTTACTTTACATGAGCCCCGCTTCGATACAAATGTATCACTCATCCCTGATA
AATATATAAAGTATAATATAGATATTGCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_43526.1	1431	0.0	129 - 1330	97	1170 / 1202	CUST_37114_PI390587928	ABC02639 ABC02640 ABC02642 ABC45343
AK248278.1	1243	0.0	85 - 1017	96	895 / 933	CUST_37113_PI390587928	ABC02639 ABC02640 ABC02642 ABC45343
MLOC_50024.1	404	0.0	1 - 404	100	404 / 404	None	ABC02639 ABC02642 ABC45343
MLOC_26547.1	594	3e-164	1 - 314	100	314 / 314	None	ABC02639 ABC02642
MLOC_42401.1	463	5e-73	1 - 171	96	164 / 171	CUST_37113_PI390587928	ABC02639 ABC02642 ABC45343
AK372985	1293	1e-59	575 - 875	81	245 / 303	None	ABC02636 ABC02638 ABC02640 ABC02642 ABC45343
MLOC_58642.1	1333	5e-58	648 - 948	81	244 / 303	None	ABC02636 ABC02638 ABC02640 ABC02642 ABC45343
MLOC_54272.1	1455	1e-53	717 - 1081	78	290 / 374	CUST_37135_PI390587928	ABC02636 ABC02638 ABC02639 ABC02640 ABC02642 ABC45343