barSeed - Barley Seed Development Database

Probe CUST_3619_PI390587928

Source Contig U35_293

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3619_PI390587928	Hv_44K_v2	CTTTTTGCATCTTCATAACGCAATGTGCATTTCATATGTGAAATGCATCCCTGTTAGTTG	825	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9319.4	2346	2e-24	534 - 593	100	60 / 60	plus	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
MLOC	MLOC_9319.3	2422	2e-24	585 - 644	100	60 / 60	plus	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
JLOC1	JLOC1_6094.6	2250	8e-25	538 - 597	100	60 / 60	plus
JLOC1	JLOC1_6094.5	1948	8e-25	538 - 597	100	60 / 60	plus
JLOC1	JLOC1_6094.4	2648	8e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_293	902	3e-25	826 - 885	100	60 / 60	plus

Contig Sequence (902 bp)

>U35_293 902 Hv_44K_v2
AGGGCGCCTCGGTCTCCTTCACGGAGGGCGAGAAGGTGCTCGCCTACCACGGGCCCCTCC
TCTACGAGGCCAAGATGGAACGTCGGAGTCGTCTGCATCGTGAAAGCTCGGGCCGGCCAC
GGACCGGCGAGCGACCCCCAGAACTTGTATGCAAAGAGAAGAAGGGAGAAGATCAACGAC
AAGCTTTGGGTTTTGCAGAAGCTGGTGCCCAACGGAACCAAAGTGGATCTCAGCACTATG
CTCGAGGAGGCAGTCCTCTACCTTAAGTTTTTGCAGCTACAGATCAAGGTAAGCCCAAAT
GACATGGTTGCATTAGGCCTTTTATCCCCTAGGAACTCTGTGTGTGATCGTGATGTGTCT
TACAAGAAATTTGGTTCATAATTTCATGGTGATGAACTCTGCAATAGTTTGTTGCTGCAA
TACCTAGTTTTCTGTAGATTGGGTCTTATTTAAAGTGAACATGATAATTCTACTGTGTTA
TTATATCCTTGCACGATCGTACTAATATTAGAATTATGCTGACTGAATAATATTTGGAGT
AGAACATGAGTTACGATGTATTATTTGGTCCCTAAATTAATACAGAAGAAAGAAGGACTT
GAATTTATGTTAGTACTCCTACCAAAGTTTGTATTCCTGTTTTTGTTATCGTCCTGGACC
AGTCAGTGCCTGCTGAAGCTTACTGAATGTATCTCTTGTTCTGGACCAGTTTTGGTTCCG
TAAAGCAAAAAAAAGTATAGAGCAGCACACACTTGTTCCTTAGTCGTCACCACTCACATT
TTCTAAACAAACCTTAGGATATTGCAAGTGTCTAATATGCATCTCCTTTTTGCATCTTCA
TAACGCAATGTGCATTTCATATGTGAAATGCATCCCTGTTAGTTGTGCNAATACTGTTTA
CC

Homology of Contig U35_293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None