barSeed - Barley Seed Development Database

Probe CUST_36016_PI390587928

Source Contig U35_31427

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36016_PI390587928	Hv_44K_v2	AAGTCAAGTCACTTCAGTTGGTGGATGACAGCTCTGCTTGCCTGCTTCCTTCTTATAATG	412	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365753	4088	2e-24	3029 - 3088	100	60 / 60	plus	ABC06000 ABC15484 ABC16853
MLOC	MLOC_11279.2	1598	2e-24	450 - 509	100	60 / 60	plus	ABC16853
MLOC	MLOC_11279.1	1571	2e-24	486 - 545	100	60 / 60	plus	ABC16853
JLOC1	JLOC1_7458.1	1530	8e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_31427	475	3e-25	413 - 472	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_31427 475 Hv_44K_v2
GCTTTGGTTTGAAGCAAACCGGCCGGCCGGCCACCAACCAACCAACGCTCCCGAATCCAT
GTACAGTACCATCAAACCTTCCGCCGCCGCCGGTGAGCTACCCGCAGCGCCGGCCGGCCC
TCCTCTGCTTTCCCTCCGCCGGGAGCTCCCGGAGACCCAGCGTAGAGGGGAGGGGAGAAG
CCAAGCCTCGGGCATGGCACGCGTCCTCCCTCTGGACATCGAGCCCGGGGACGGGGAGGC
GCCCAGAGCTGGTGAGACGGTTGCTAGCATCCCAAGCTCTTCAGCTGTGGTGTCATGCAA
TAGAATTGACCATTCTGAACAAAACATAAAGGACGAGGAATACGCGATGCTGATGACGCC
ATCTCAACATGCAACGGCTGACAACAACACAGAAACTTTACCTGAGCAACCCAAGTCAAG
TCACTTCAGTTGGTGGATGACAGCTCTGCTTGCCTGCTTCCTTCTTATAATGGCA

Homology of Contig U35_31427 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None