barSeed - Barley Seed Development Database

Probe ABC16853

Source Contig ABC16853

barSeed

Links

Affymetrix Source Sequence (1083 bp)

>ABC16853 1083
TTGCCTTTGAGAAGAACCAACTGATGTTGACTTGTTGGCTGGCTCTTCAGTTGTAGTTAC
CATTTTGGGCTGTGATCTTTTGCTTGGTTCTGTTGCCAATCATGCAATGGGAAGCAAGTG
CCTTTGGCCGTCCAGTATTGGCTCTTGTCCTCGTCGCATCTTTGGCTCTCCTCCCACTCA
TCTTAGTCCCTTCTGGACCTTCTATGTGGTTAGCAGGAATGATCTTCGGTTATGGCTGGG
GTTTCTTGATTATTATGGTTGGGACTACTCTTGGCATGGTTGCATCATATTGGATCGGCT
CATTGTTCCGCGAACGTCTACATGCATGGTTAAAAAGATGGCCTCAGCAGATAGCTCTAA
TACAGCTTGCTGGTGAAGGGAACTGGTTTCAGCAGTTTCGAGTTGTTGCACTATTCAGAG
TCTCACCATTTCCGTATACAATTTTTAACTATGCCGTAACCGTGACAGAAATCAAGTTCA
ATCCTTACCTATGTGGTTCAGTTGCCGGAATGGTACCTGAGGCATTCATCTATATCTATA
GCGGACGGTTAATACGTACTTTGGCTGATGTGAAGTATGGCAAGTATAGGATGACGCCAG
TGGAGCTAACATACAACATAATCTCGTTCATCGTTGCTGTTGTCCTCACCGTTGCCTTTA
CAGTTTACGCCAAGAGGGCACTAAACCACATAAAAAGCTCAGATGATATTTGCGCAGAGG
ACCAACCTGGGGTGACTGCACTCAAGAATGGCCGCCAGGAGTGTTCCCATGCACATCCTC
TAGCCCTAGATGTCGTGTGATGATATCTGGATCTATTGGGAGCTGAGCTGCTTAGAGAAA
AAGTGAGGTGTGGTGTGGTGTTACTTGGTCATCGTTTTCTCGGTTGGAAGGGGTGAGGTA
GGCTCTGATATCAGGTGGATGCACCTGTCTAACTAGATACATGCCCTGCTAATATGGTTA
TAGTACATACTTGATTAGTAGTTTCATGTACTTAATCACCAGAACATGTGACCAGCTTTA
ACTTTTGTTGTTCTAGTTGTTGATCGACTGGCAATTTAGCCTTGTCTTGAGGTGCATGTA
TTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364785	1542	0.0	453 - 1450	100	998 / 998	CUST_25503_PI390587928	ABC16853
MLOC_62405.1	688	0.0	57 - 600	100	544 / 544	CUST_25503_PI390587928	ABC16853
MLOC_64908.1	1567	0.0	660 - 1115	100	456 / 456	None	ABC16853
MLOC_11279.1	1571	0.0	593 - 1233	90	581 / 644	CUST_18804_PI390587928 CUST_36016_PI390587928	ABC16853
AK365753	4088	0.0	3136 - 3776	90	580 / 644	CUST_18804_PI390587928 CUST_36016_PI390587928	ABC06000 ABC15484 ABC16853
MLOC_64908.2	842	0.0	1 - 422	100	422 / 422	None	ABC16853
MLOC_11279.2	1598	7e-96	557 - 795	93	223 / 239	CUST_18804_PI390587928 CUST_36016_PI390587928	ABC16853