barSeed - Barley Seed Development Database

Probe CUST_35661_PI390587928

Source Contig U35_14916

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35661_PI390587928	Hv_44K_v2	ATCCGAAATGTACTATTAATAGTGCTGCTCTTAAAGGATGCATGTGGTGCAATGAAAAAA	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65378.1	1661	9e-22	1532 - 1586	100	55 / 55	plus	ABC02528 ABC02532 ABC02535 ABC02539 ABC05312 ABC29740 ABC46271 ABC47157
JLOC1	JLOC1_43018.1	1966	5e-22	1529 - 1583	100	55 / 55	plus
Harvest21	ABC02539	655	3e-25	573 - 632	100	60 / 60	plus	ABC02539
Harvest21	ABC46271	343	6e-22	12 - 71	97	58 / 60	minus	ABC46271
Harvest35	U35_14916	643	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (643 bp)

>U35_14916 643 Hv_44K_v2
TCCCCCACGTCATCTCCGAGGCGCCGCCGTTCCCGGGCGTCACCCACGTCGGCGGCGACA
TGTTCCAGAAGGTGCCCTCGGGCGACGCCATCCTCATGAAGTGGATCCTCCACGACTGGA
GCGACGAGCACTGCGCGACGCTGCTCAAGAACTGCTACGACGCGCTGCCGGCGCACGGCA
AGGTGGTGCTCGTGGAGTGCATCCTGCCGGTGAACCCGGAGGCCACGCCCAAGGCGCAGG
GGGTGTTCCACGTCGACATGATCATGCTCGCGCACAACCCCGGCGGCAGGGAGAGGTACG
AGAGGGAGTTCGAGGCCCTGGCCAAGGGCGCCGGCTTCGCAGCCATGAAGACCACCTACA
TCTACGCCAACGCATTTGCCATCGAGTTCACCAAGTAGATCCATGGCAACCGCCCACCGA
TCGGAGACCATCTTCCTCCTGCTCGCTGGCGCTGCGCTGCTGCGTCAACCTGCATATGTA
CTTTGGCTTGGTTTTCCTCCCTCTGTTTCCCTGATTTTGTCATGCTAGCTCTGAATCATT
CTGAATTCTACTGGTTGTGTCGTCCATCGTCTATCCGAAATGTACTATTAATAGTGCTGC
TCTTAAAGGATGCATGTGGTGCAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06100.1	369	4e-72	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g16530.1	361	5e-84
Arabidopsis v10	AT5G54160.1	363	1e-51	\| Symbols: ATOMT1, OMT1 \| O-methyltransferase 1 \| chr5:21982075-21984167 FORWARD LENGTH=363