barSeed - Barley Seed Development Database

Probe CUST_35657_PI390587928

Source Contig U35_14920

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35657_PI390587928	Hv_44K_v2	AACCACTCCATCATCATCACCAAGAAGCTCCTCGAGGTGTACAAGGGCTTCGAGGGCCTC	642	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359402	1362	2e-24	609 - 668	100	60 / 60	plus	ABC02528 ABC02532 ABC02535 ABC02539 ABC05312 ABC29740 ABC46271 ABC47157
MLOC	MLOC_65378.2	1508	2e-24	809 - 868	100	60 / 60	plus	ABC02528 ABC02532 ABC02535 ABC02539 ABC05312 ABC46271 ABC47157
MLOC	MLOC_65378.1	1661	2e-24	809 - 868	100	60 / 60	plus	ABC02528 ABC02532 ABC02535 ABC02539 ABC05312 ABC29740 ABC46271 ABC47157
JLOC1	JLOC1_43018.1	1966	8e-25	806 - 865	100	60 / 60	plus
Harvest21	ABC02534	1013	3e-25	625 - 684	100	60 / 60	plus
Harvest35	U35_46798	501	3e-25	113 - 172	100	60 / 60	plus
Harvest35	U35_14920	732	3e-25	643 - 702	100	60 / 60	plus

Contig Sequence (732 bp)

>U35_14920 732 Hv_44K_v2
GGTCCCCAATTCCTCGAGCACTGTTGGCCTACTGGATTCCTCATCGCTCACACCAAAATC
AACCACCACCACCAGCAGCAGCTCGGCTCCGGAGAGGCAGAGGCAGAGATGGGCTCCACC
GCAGCGGACATGGCCGCCTCCTCCGACGAGGAGGCGTGCATGTACGCCCTCCAGCTCGTC
TCGTCGTCGATCCTCCCGATGACGCTCAAGAACGCCATCGAGCTGGGCCTCCTCGACACC
CTGGTGGCCGCCGGCGGCAAGCTGCTGACCCCCGCCGAGGTGGCCGCCAAGCTCCCGTCC
ACGGCGAACCCCGCCGCGGCGGACATGGTGGACCGCATGCTCCGGCTGCTGGCCTCGTAC
AACGTGGTGTCGTGCACCATGGAGGAGGGCAAGGACGGGCGGCTGTCCCGGCGGTACGGC
GCCGCGCCCGTGTGCAAGTTCCTCACCCCCAACGAGGACGGCGTCTCCATGGCGGCGCTC
GCGCTCATGAACCAGGACAAGGTCCTCATGGAGAGCTGGTACTATCTGAAGGACGCTGTC
CTTGACGGCGGCATCCCGTTCAACAAGGCGTACGGGATGTCCGCGTTCGAATACCACGGC
ACGGACCCGCGCTTCAACCGCGTGTTCAACGAAGGGATGAAGAACCACTCCATCATCATC
ACCAAGAAGCTCCTCGAGGTGTACAAGGGCTTCGAGGGCCTCGGCACCATCGTCGACGTG
GGCGGCGGCGTG

Homology of Contig U35_14920 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06100.1	369	4e-113	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g16530.1	361	2e-120
Arabidopsis v10	AT5G54160.1	363	1e-83	\| Symbols: ATOMT1, OMT1 \| O-methyltransferase 1 \| chr5:21982075-21984167 FORWARD LENGTH=363