barSeed - Barley Seed Development Database

Probe CUST_35522_PI390587928

Source Contig U35_14178

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35522_PI390587928	Hv_44K_v2	CTTGCAGTTGTATTACCTTTGTACAATGTAGCTTCCTTCCAAATTGAGTTCATGAATTTG	692	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58454.1	855	2e-24	792 - 851	100	60 / 60	plus	ABC01321 ABC01323 ABC01327 ABC01328 ABC01330 ABC01336 ABC01338 ABC01339 ABC47433
JLOC1	JLOC1_37980.2	771	8e-25	616 - 675	100	60 / 60	plus
JLOC1	JLOC1_37980.1	807	8e-25	652 - 711	100	60 / 60	plus
Harvest21	ABC47433	381	3e-25	46 - 105	100	60 / 60	minus	ABC47433
Harvest21	ABC27297	641	3e-25	508 - 567	100	60 / 60	plus
Harvest21	ABC01322	778	3e-25	693 - 752	100	60 / 60	plus
Harvest35	U35_28429	641	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_14178	796	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_14178 796 Hv_44K_v2
TTTTCCTCCCTGTCACCTTCCTCCCTTCCTCCACTCGCGCTTCGCTCTTTTCTCTCTCAG
ATCTCCGTCTCGTCCGCGTGTTGGGGTAGGAGCCATGGCCGACCAGCTCACCGACGACCA
GATCGCCGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGACGGAGACGGCTGCATCAC
CACCAAGGAACTTGGAACTGTGATGCGTTCGCTAGGGCAGAACCCCACTGAGGCAGAGCT
TCAGGATATGATCAATGAAGTGGATGCTGATGGCAATGGAACGATTGACTTTCCTGAGTT
CCTCAACCTAATGGCACGTAAGATGAAGGACACTGATTCTGAGGAGGAGCTTAAGGAGGC
CTTCCGCGTGTTTGACAAGGACCAGAATGGTTTCATCTCGGCGGCTGAACTCCGCCATGT
CATGACCAACCTTGGTGAGAAGCTGACAGACGAGGAGGTGGATGAGATGATCCGCGAGGC
TGATGTCGATGGTGACGGACAGATCAATTACGAAGAGTTTGTGAAGGTGATGATGGCCAA
GTGAGCTGCCATAGTAAGCTAGTTCTCTCTTGATGTTAGCAGCTAGTTTAGCCTTGAAAA
CTGACGGCACTTGGTACTACTGTTCAGTCCAGTGAATGAACATATTCTGCTTCTTTTCTT
CCCAGGGATGTTGAGAATTTCGTTTGGATTTTCTTGCAGTTGTATTACCTTTGTACAATG
TAGCTTCCTTCCAAATTGAGTTCATGAATTTGCTGTTTAAAAAAAAAAAAAAAAAATGCC
TTCATGGTATCATTAA

Homology of Contig U35_14178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48780.1	150	7e-102	protein\|OsCam1-2 - Calmodulin, expressed
Brachypodium v1_2	Bradi2g10010.1	150	3e-102
Arabidopsis v10	AT3G43810.1	149	1e-101	\| Symbols: CAM7 \| calmodulin 7 \| chr3:15664619-15666355 REVERSE LENGTH=149