barSeed - Barley Seed Development Database

Probe ABC01330

Source Contig ABC01330

barSeed

Links

Affymetrix Source Sequence (832 bp)

>ABC01330 832
CAAGAACGCTTATTCGCATCGCCACCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCGCCA
TCTCCGACCCGACTTGCGGCCAATGGCGGACCAGCTCACCGACGACCAGATCGCCGAGTT
CAAGGAGGCTTTCAGCCTCTTCGACAAGGATGGGGACGGTTGCATTACGACCAAGGAGCT
GGGAACTGTCATGCGTTCCCTGGGGCAGAATCCCACTGAGGCAGAGCTTCAAGACATGAT
CAATGAGGTGGATGCCGACGGCAATGGAACAATTGATTTCCCCGAATTCCTCAACCTTAT
GGCCCGCAAGATGAAGGACACTGATTCTGAGGAAGAGCTCAAGGAGGCATTCCGTGTGTT
TGACAAGGATCAAAATGGTTTTATCTCTGCTGCTGAACTGCGCCATGTCATGACCAACCT
TGGTGAGAAGTTGACTGATGAGGAGGTTGACGAGATGGTCCGTGAGGCTGATGTTGATGG
TGACGGCCAGATCAACTATGACGAATTTGTTAAAGTCATGATGGCCAAGTAAGTTGCATT
ACCATCTGAGGGAAGCTTCGGTTATCAGACCAAAATATTACCTACCCAGGTGCCATTTTG
TGGGATGGCTATTGTATTGAACCGAAAACAATATAACACTGTGTGGTGTCATATGTTGTA
GGCAATGATTGTTTGCCTTGAAGATTTTATAGATCCTGCCCTGGTCTTTCTGAATTTGTC
TGTTCCGTTATTTATGTTTGGTTCGCTTCAACTTTTCAAGAGTGTAGCCACAATGTGTTA
ATGAATAACTATATTTCACCGTTCCATGATTTCAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251556.1	850	0.0	47 - 850	100	804 / 804	CUST_35495_PI390587928	ABC01321 ABC01327 ABC01330 ABC35072
MLOC_27889.1	1238	0.0	451 - 1107	100	657 / 657	CUST_35495_PI390587928	ABC01330 ABC35072
MLOC_58454.2	644	1e-152	70 - 527	88	404 / 459	None	ABC01321 ABC01323 ABC01327 ABC01328 ABC01330 ABC01336 ABC01338 ABC01339 ABC47433
MLOC_58454.1	855	1e-152	191 - 648	88	404 / 459	CUST_35522_PI390587928	ABC01321 ABC01323 ABC01327 ABC01328 ABC01330 ABC01336 ABC01338 ABC01339 ABC47433
MLOC_19924.1	898	3e-133	251 - 700	86	386 / 450	None	ABC01321 ABC01323 ABC01327 ABC01328 ABC01330 ABC01340
AK368424	825	1e-132	129 - 574	86	383 / 446	CUST_33281_PI390587928	ABC01321 ABC01323 ABC01327 ABC01328 ABC01330 ABC01336 ABC01338 ABC01339 ABC01340
MLOC_2469.1	772	9e-79	526 - 685	100	160 / 160	CUST_15335_PI390587928	ABC01330 ABC51688 ABC52339