barSeed - Barley Seed Development Database

Probe CUST_35495_PI390587928

Source Contig U35_14182

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35495_PI390587928	Hv_44K_v2	CGCTTCAACTTTTCAAGAGTGTAGCCACAATGTGTTAATGAATAACTATATTTCACCGTT	767	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251556.1	850	2e-24	790 - 849	100	60 / 60	plus	ABC01321 ABC01327 ABC01330 ABC35072
MLOC	MLOC_27889.1	1238	2e-24	1037 - 1096	100	60 / 60	plus	ABC01330 ABC35072
JLOC1	JLOC1_18772.1	915	8e-25	730 - 789	100	60 / 60	plus
Harvest21	ABC01330	832	3e-25	744 - 803	100	60 / 60	plus	ABC01330
Harvest21	ABC35072	369	1e-23	44 - 103	98	59 / 60	minus	ABC35072
Harvest35	U35_14182	901	3e-25	768 - 827	100	60 / 60	plus

Contig Sequence (901 bp)

>U35_14182 901 Hv_44K_v2
GGAGGGGAAGTCTTCTCCTACCCACAAGAACGCTTATTCGCATCGCCACCTTCCTTCCTC
CCTCCCTCCCTCCCTCCCTCGCCATCTCCGACCCGACTTGCGGCCAATGGCGGACCAGCT
CACCGACGACCAGATCGCCGAGTTCAAGGAGGCTTTCAGCCTCTTCGACAAGGATGGGGA
CGGTTGCATTACGACCAAGGAGCTGGGAACTGTCATGCGTTCCCTGGGGCAGAATCCCAC
TGAGGCAGAGCTTCAAGACATGATCAATGAGGTGGATGCCGACGGCAATGGAACAATTGA
TTTCCCCGAATTCCTCAACCTTATGGCCCGCAAGATGAAGGACACTGATTCTGAGGAAGA
GCTCAAGGAGGCATTCCGTGTGTTTGACAAGGATCAAAATGGTTTTATCTCTGCTGCTGA
ACTGCGCCATGTCATGACCAACCTTGGTGAGAAGTTGACTGATGAGGAGGTTGACGAGAT
GGTCCGTGAGGCTGATGTTGATGGTGACGGCCAGATCAACTATGACGAATTTGTTAAAGT
CATGATGGCCAAGTAAGTTGCATTACCATCTGAGGGAAGCTTCGGTTATCAGACCAAAAT
ATTACCTACCCAGGTGCCATTTTGTGGGATGGCTATTGTATTGAACCGAAAACAATATAA
CACTGTGTGGTGTCATATGTTGTAGGCAATGATTGTTTGCCTTGAAGATTTTATAGATCC
TGCCCTGGTCTTTCTGAATTTGTCTGTTCCGTTATTTATGTTTGGTTCGCTTCAACTTTT
CAAGAGTGTAGCCACAATGTGTTAATGAATAACTATATTTCACCGTTCCATGAAAAAAAA
AAAAAAAAAAAAAATACCCCTCAGTTATTGAAGTGTTATACTGTAAAAAAAAAAAAAAAA
A

Homology of Contig U35_14182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48780.1	150	1e-100	protein\|OsCam1-2 - Calmodulin, expressed
Brachypodium v1_2	Bradi2g10790.1	150	8e-102
Arabidopsis v10	AT3G43810.1	149	1e-100	\| Symbols: CAM7 \| calmodulin 7 \| chr3:15664619-15666355 REVERSE LENGTH=149