barSeed - Barley Seed Development Database

Probe CUST_35462_PI390587928

Source Contig U35_14194

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35462_PI390587928	Hv_44K_v2	GTGACAGTACTATGTCAGCAGTTGCTCTTTAAGCCGAATAAATAAAGCAGATTTGCTTCC	2795	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54031.2	1718	2e-24	61 - 120	100	60 / 60	minus	ABC01734 ABC01735 ABC01736 ABC01737 ABC42329
MLOC	MLOC_54031.1	2939	2e-24	63 - 122	100	60 / 60	minus	ABC01734 ABC01735 ABC01736 ABC01737 ABC42329
JLOC1	JLOC1_34760.1	2978	8e-25	2830 - 2889	100	60 / 60	plus
Harvest21	ABC01736	2843	3e-25	2766 - 2825	100	60 / 60	plus	ABC01736
Harvest35	U35_48862	472	3e-25	89 - 148	100	60 / 60	minus
Harvest35	U35_14194	2886	3e-25	2796 - 2855	100	60 / 60	plus

Contig Sequence (2886 bp)

>U35_14194 2886 Hv_44K_v2
TCGAGCACTGTTGGCCTCACACACACTCACGCAACACACATCCATCTTCACTGAAAAGTG
AAAAACAGTGTGCTGGTGCCATTGGTTGGAGCAGTGAAAGCGAGGAGAGGAGGCCAAGAA
CAAGATGCTGCTGGGAGGGCTGATCGACACCCTCACGGGGGCGAACAAGAGCGCCCGGCT
CAAGGGCACGGTGGTGCTCATGCGCAAGAACGTGCTGGACCTCAACGACTTCGGCGCCAC
CATCATCGACGGCATCGGCGAGTTCCTCGGCAAGGGCGTCACCTGCCAGCTTATCAGCTC
CACCGCCGTCGACCAAGACAACGGCGGTCGCGGGAAGGTGGGCGCGGAGGCGGAGCTGGA
GCAGTGGGTGACGAGCCTGCCGTCGCTGACGACGGGGGAGTCCAAGTTCGGCCTCACCTT
CGACTGGGAGGTGGAGAAGCTCGGGGTGCCGGGCGCCATCGTCGTCAACAACTACCACAG
CTCCGAGTTCCTGCTTAAAACCATCACCCTCCACGACGTCCCCGGCCGCAGCGGCAACCT
CACCTTCGTCGCCAACTCATGGATCTACCCCGCCGCCAACTACCGATACAGCCGCGTCTT
CTTCGCCAACGACACGTACCTGCCGAGCCAGATGCCGGCGGCGCTGAAGCCGTACCGCGA
CGACGAGCTCCGGAACCTGCGTGGCGACGACCAGCAGGGCCCGTACCAGGAGCACGACCG
CATCTACCGCTACGACGTCTACAACGACCTCGGCGAGGGCCGCCCCATCCTCGGCGGCAA
CTCCGACCACCCTTACCCGCGCCGCGGCCGCACGGAGCGCAAGCCCAACGCCAGCGACCC
GAGCCTGGAGAGCCGGCTGTCGCTGCTGGAGCAGATCTACGTGCCGCGGGACGAGAAGTT
CGGCCACCTCAAGACGTCCGACTTCCTGGGCTACTCCATCAAGGCCATCACGCAGGGCAT
CCTGCCGGCCGTGCGCACCTACGTGGACACCACCCCCGGCGAGTTCGACTCCTTCCAGGA
CATCATCAACCTCTATGAGGGCGGCATCAAGCTGCCCAAGGTGGCCGCCCTGGAGGAGCT
CCGTAAGCAGTTCCCGCTCCAGCTCATCAAGGACCTCCTCCCCGTCGGCGGCGACTCCCT
GCTTAAGCTCCCCGTGCCCCACATCATCCAGGAGAACAAGCAGGCGTGGAGGACCGACGA
GGAGTTCGCACGGGAGGTGCTCGCCGGCGTCAACCCGGTCATGATCACGCGTCTCACGGA
GTTCCCGCCAAAAAGTAGTCTGGACCCTAGCAAGTTTGGTGACCACACCAGCACCATCAC
GGCGGAGCACATAGAGAAGAACCTCGAGGGCCTCACGGTGCAGCAGGCGCTGGAAAGCAA
CAGGCTGTACATCCTTGATCACCATGACCGGTTCATGCCGTTCCTGATCGACGTCAACAA
CCTGCCCGGCAACTTCATCTACGCCACGAGGACCCTCTTCTTCCTGCGCGGCGACGGCAG
GCTCACGCCGCTCGCCATCGAGCTGAGCGAGCCCATCATCCAGGGCGGCCTTACCACGGC
CAAGAGCAAGGTTTACACGCCGGTGCCCAGCGGCTCCGTCGAAGGCTGGGTGTGGGAGCT
CGCCAAGGCCTACGTCGCCGTCAATGACTCCGGGTGGCACCAGCTCGTCAGCCACTGGCT
GAACACTCACGCGGTGATGGAGCCGTTCGTGATCTCGACGAACCGGCACCTTAGCGTGAC
GCACCCGGTGCACAAGCTGCTGAGCCCGCACTACCGCGACACCATGACCATCAACGCGCT
GGCGCGGCAGACGCTCATCAACGCCGGCGGCATCTTCGAGATGACGGTGTTCCCGGGCAA
GTTCGCGTTGGGGATGTCGGCCGTGGTGTACAAGGACTGGAAGTTCACCGAGCAGGGACT
GCCGGACGATCTCATCAAGAGGGGCATGGCGGTGGAGGACCCGTCGAGCCCGTACAAGGT
GCGGTTGCTGGTGTCGGACTACCCGTACGCGGCGGACGGGCTGGCGATCTGGCACGCCAT
TGAGCAGTACGTGAGCGAGTACCTGGCCATCTACTACCCGAACGACGGCGTGCTGCAGGG
CGATACGGAGGTGCAGGCGTGGTGGAAGGAGACGCGCGAGGTCGGGCACGGCGACCTCAA
GGACGCCCCATGGTGGCCCAAGATGCAAAGTGTGCCGGAGCTGGCCAAGGCGTGCACCAC
CATCATCTGGATCGGGTCGGCGCTGCATGCGGCAGTCAACTTCGGGCAGTACCCCTACGC
GGGGTTCCTCCCGAACCGGCCGACGGTGAGCCGGCGCCGCATGCCGGAGCCCGGCACGGA
GGAGTACGCGGAGCTGGAGCGCGACCCGGAGCGGGCCTTCATCCACACCATCACGAGCCA
GATCCAGACCATCATCGGCGTGTCGCTGCTGGAGGTGCTGTCGAAGCACTCCTCCGACGA
GCTGTACCTCGGGCAGCGGGACACGCCGGAGTGGACCTCGGACCCAAAGGCCCTGGAGGT
GTTCAAGCGGTTCAGCGACCGGCTGGTGGAGATCGAGAGCAAGGTGGTGGGCATGAACCA
TGACCCGGAGCTCAAGAACCGCAACGGCCCGGCTAAGTTTCCCTACATGCTGCTCTACCC
CAACACCTCCGACCACAAGGGCGCCGCTGCCGGGCTTACCGCCAAGGGCATCCCCAACAG
CATCTCCATCTAATCTAAGCCATCGGCAACCATGGATGAATAAAGGGCGTTCGCCACGTA
CGAAACTTGTCGAGAGATTGGTGTAGTGTGTGTCTGTGACAGTACTATGTCAGCAGTTGC
TCTTTAAGCCGAATAAATAAAGCAGATTTGCTTCCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

Homology of Contig U35_14194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g52860.1	871	protein\|lipoxygenase, putative, expressed
Brachypodium v1_2	Bradi1g11680.1	861
Arabidopsis v10	AT1G55020.1	859	\| Symbols: LOX1, ATLOX1 \| lipoxygenase 1 \| chr1:20525798-20530143 FORWARD LENGTH=859