barSeed - Barley Seed Development Database

Probe CUST_35460_PI390587928

Source Contig U35_14196

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35460_PI390587928	Hv_44K_v2	ATCTTCACTGAAAAGTGAAAAACAGTGTGCTGGTGCCATTGGTTGGAGCAGTGAAAGCGA	48	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54031.1	2939	2e-24	2815 - 2874	100	60 / 60	minus	ABC01734 ABC01735 ABC01736 ABC01737 ABC42329
JLOC1	JLOC1_34760.1	2978	8e-25	78 - 137	100	60 / 60	plus
Harvest21	ABC01736	2843	3e-25	14 - 73	100	60 / 60	plus	ABC01736
Harvest35	U35_32516	456	3e-25	50 - 109	100	60 / 60	plus
Harvest35	U35_14196	481	3e-25	49 - 108	100	60 / 60	plus
Harvest35	U35_14194	2886	3e-25	44 - 103	100	60 / 60	plus

Contig Sequence (481 bp)

>U35_14196 481 Hv_44K_v2
TCGAGCACTGTTGGCCTACGGACACACACACTCACGCAACACACATCCATCTTCACTGAA
AAGTGAAAAACAGTGTGCTGGTGCCATTGGTTGGAGCAGTGAAAGCGAGGAGAGGAGGCC
AAGAACAAGATGCTGCTGGGAGGGCTGATCGACACCCTCACGGGGGCGAACAAGAGCGCC
CGGCCCAAGGGCACGGTGGTGCTCATGCGCAAGAACGTGCTGGACCTCAACGACTTCGGC
GCCACCATCATCGACGGCATCGGCGAGTTCCTCGGCAAGGGCGTCACCTGCCAGCTTATC
AGCTCCACCGCCGTCGACCAAGACAACGGCGGTCGCGGGAAGGTGGGCGCGGAGGCGGAG
CTGGAGCAGTGGGTGACGAGCCTGCCGTCGCTGACGACGGGGGAGTCCAAGTTCGGCCTC
ACCTTCGACTGGGAGGTGGAGAAGCTCGGGGTGCCGGGCGCCATCGTCGTCAACACTACC
A

Homology of Contig U35_14196 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52860.1	871	1e-51	protein\|lipoxygenase, putative, expressed
Brachypodium v1_2	Bradi1g11680.1	861	1e-53
Arabidopsis v10	None