barSeed - Barley Seed Development Database

Probe CUST_35458_PI390587928

Source Contig U35_14198

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35458_PI390587928	Hv_44K_v2	GTTCTTCCTCAAGACCATCACCCTCGACAACGTGCCCGGCCGCGGTACCATCGTCTTCGT	362	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355935	3049	7e-23	433 - 492	98	59 / 60	plus	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288
MLOC	MLOC_65160.1	1342	7e-23	416 - 475	98	59 / 60	minus	ABC01735 ABC01736
JLOC1	JLOC1_42860.1	1200	4e-23	726 - 785	98	59 / 60	plus
Harvest21	ABC01732	3083	1e-23	422 - 481	98	59 / 60	plus
Harvest35	U35_14198	446	3e-25	363 - 422	100	60 / 60	plus
Harvest35	U35_32388	485	1e-23	347 - 406	98	59 / 60	plus
Harvest35	U35_14193	3110	1e-23	457 - 516	98	59 / 60	plus

Contig Sequence (446 bp)

>U35_14198 446 Hv_44K_v2
CACACAGCAGCACCACAGCGAGCTAACTTAGCAAGCGTGCCACACTCCCCAGAGATCGAG
CGAAGATGTTTGGCGTCGGCGGCATCGTGAGCGACCTGACGGGGGGCCTCCGGGGCGCCC
ACCTCAAGGGCTCCGTCGTCCTCATGCGCAAGAACGCGCTCGACTTCAACGACTTCGGCG
CCACCGTCATGGACGGCGTCACCGAGCTCCTCGGCCGCGGCGAACCTGGAGCAGTGGCTC
CTGCCGACGAACCTGCCGTTCATCACCACCGGCGAGAACAAGTTCGCCGTCACCTTCGAC
TGGTCGGTGGACAAGCTGGGGGTGCCGGGCGCCATCATCGTCAAGAACAACCACGCCTCC
GAGTTCTTCCTCAAGACCATCACCCTCGACAACGTGCCCGGCCGCGGTACCATCGTCTTC
GTCGCCACTCATGGGTCTACCCGCAG

Homology of Contig U35_14198 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None