barSeed - Barley Seed Development Database

Probe CUST_34712_PI390587928

Source Contig U35_13836

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34712_PI390587928	Hv_44K_v2	TCCATATATCATCTGAACTTTGGGTTGTGTTTCGTCATCTTTCCTGATTCAAGATTGCAA	794	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356610	874	9e-22	796 - 857	97	60 / 62	plus	ABC01030 ABC01040 ABC01063 ABC01108 ABC22044 ABC49720
JLOC1	JLOC1_32428.1	1126	5e-22	895 - 956	97	60 / 62	plus
Harvest21	ABC01085	858	3e-25	791 - 850	100	60 / 60	plus
Harvest35	U35_13836	857	3e-25	795 - 854	100	60 / 60	plus
Harvest35	U35_36561	697	2e-22	64 - 125	97	60 / 62	minus

Contig Sequence (857 bp)

>U35_13836 857 Hv_44K_v2
AGACACCCACCCGAGGAGAAAAAGAAAGGATTTTTCGTTTCGTCTTCGCCTGCTTCCGCT
CCCTGCTTCGTCGTCCTCACGCGACCAGCTTGACTCCCTCCCCCCCGCACGCGCGAGCAG
CAGGGGAGGGCGAGAAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCC
TCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAAATTCAGGACAAGGAAG
GGATTCCTCCGGACCAGCAGCGTTTGATATTTGCTGGCAAGCAGTTGGAGGATGGACGCA
CACTTGCTGACTACAACATTCAGAAGGAGTCGACTCTTCACTTGGTCCTCAGGCTCAGGG
GTGGTACGATGATCAAAGTCAAGACTCTCACTGGGAAGGAGATTGAAATTGACATTGAGC
CCACCGACACGATTGACAGGATCAAGGAGCGTGTTGAGGAGAAAGAAGGCATTCCCCCTG
TGCAGCAAAGGCTGATTTATGCTGGCAAGCAGCTTGCAGATGACAAGACTGCCAAGGACT
ACAACATCGAAGGTGGCTCGGTCCTCCATCTTGTCCTTGCCCTGAGGGGTGGTTACTAGT
TAAGCTGTAATGGAAACACTTGCGTCCTGAGAGAAGTGACCATTGGTGGCATGGAACCTG
TGTTGCAAAGAGATAATAACAAACTAGCTTTGCTTAGTGGGAGGGGCTGTCTTCCATGTT
ATCTGCCCATATGATTTGACAAAACTACTTGCAAGTTTGAAAAAAAATGTTATTAGCTCT
GTTGCGTAGTAAGATCCATATATCATCTGAACTTTGGGTTGTGTTTCGTCATCTTTCCTG
ATTCAAGATTGCAAGTT

Homology of Contig U35_13836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25320.1	154	1e-88	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi4g30470.1	154	5e-89
Arabidopsis v10	AT1G31340.1	156	3e-88	\| Symbols: RUB1, NEDD8, ATRUB1 \| related to ubiquitin 1 \| chr1:11218076-11219417 REVERSE LENGTH=156