barSeed - Barley Seed Development Database

Probe CUST_34668_PI390587928

Source Contig U35_13857

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34668_PI390587928	Hv_44K_v2	GCAAGCGTCTGTATTTTTCTAGATGCGTTTGGATGTCTTTAAAATTTCTCTAGAATTCTG	1029	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353861	1168	2e-24	1026 - 1085	100	60 / 60	plus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01237 ABC01242
JLOC1	JLOC1_24245.2	558	4e-23	360 - 419	98	59 / 60	plus
JLOC1	JLOC1_24245.1	1084	4e-23	886 - 945	98	59 / 60	plus
Harvest21	ABC01223	1125	3e-25	1017 - 1076	100	60 / 60	plus	ABC01223
Harvest35	U35_13857	1148	3e-25	1030 - 1089	100	60 / 60	plus

Contig Sequence (1148 bp)

>U35_13857 1148 Hv_44K_v2
ACACCACCACAGAGAGCTAAGCGCATTCGCATCTTGAGCGCACACACACCGACCCTAGCT
TGCCGATCAGCCGAGGATGGCCAAGGACATCGAGGCGGCGCCCCCAGGCGGCGAGTACGG
GGCCAAGGACTACTCCGACCCGCCGCCGGCGCCGCTCTTCGACGCGGAGGAGCTGACCAA
GTGGTCCCTGTACCGCGCGGTGATCGCCGAGTTCGTGGCCACGCTGCTCTTCCTCTACAT
CACCGTGGCCACCGTCATTGGGTACAAGCACCAGGCGGACCCCGCCGGCCCCAATGCTGC
CGACGCGGCGTGCAGCGGCGTCGGCATCCTCGGCATCGCCTGGGCGTTCGGCGGCATGAT
CTTCGTCCTCGTCTACTGCACCGCCGGTGTCTCGGGTGGCCACATCAACCCGGCGGTGAC
GTTCGGGCTGTTCCTGGCGCGCAAGGTTTCGCTGGTGCGCGCGGTGCTCTACATCATCGC
GCAGTGCCTGGGCGCCATCTGTGGCGTGGGGCTCGTCAAGGGGTTCCAGAGCGCCTTCTA
CGTGCGCTACGGCGGCGGCGCCAACGAGCTCAGCGCGGGCTACTCCAAGGGCACCGGGCT
CGCCGCCGAGATCATCGGCACCTTCGTGCTCGTCTACACCGTCTTCTCCGCCACCGACCC
CAAGCGCAGCGCCCGTGACTCCCACGTCCCAGTGCTGGCTCCTTTGCCAATCGGCTTCGC
GGTGTTCATGGTGCACCTGGCCACTATCCCAATCACCGGCACCGGCATCAACCCGGCAAG
GAGCTTCGGAGCTGCCGTGATCTACAACAACGAGAAGGCCTGGGATGACCACTGGATCTT
CTGGGTGGGGCCATTCATCGGAGCCGCCATTGCCGCCGCCTACCACCAGTACGTCCTGAG
GGCGAGTGCCACCAAGCTTGGCTCGTCTGCCTCCTTCGGTAGGAGCTAGATCGGTCCGCC
GCCGTGTGGATGATCGGAGGCACTGAAAAAGAAATATATCAGTGTGATATGGCTCGGATC
GTGTATTATGCAAGCGTCTGTATTTTTCTAGATGCGTTTGGATGTCTTTAAAATTTCTCT
AGAATTCTGTGAATTTGGATCGTTGAGGAATTTGGATGCCTTGTTTTTTTCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_13857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44060.1	291	4e-180	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi5g15970.1	288	0.0
Arabidopsis v10	AT2G37170.1	285	5e-162	\| Symbols: PIP2B, PIP2;2 \| plasma membrane intrinsic protein 2 \| chr2:15613624-15614791 REVERSE LENGTH=285