barSeed - Barley Seed Development Database

Probe CUST_34650_PI390587928

Source Contig U35_13861

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34650_PI390587928	Hv_44K_v2	GGAGTTCGCCATGTTTGCTTGCTGCTGTTTCTTCCAAGTGTGCTTTTCTTTTGCTCGCTC	1138	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13871.2	1881	2e-24	33 - 92	100	60 / 60	minus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
MLOC	MLOC_13871.1	1607	2e-24	33 - 92	100	60 / 60	minus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC39024
JLOC1	JLOC1_9427.1	1496	8e-25	1253 - 1312	100	60 / 60	plus
Harvest21	ABC01236	1310	3e-25	1123 - 1182	100	60 / 60	plus
Harvest21	ABC39204	557	4e-24	46 - 103	100	58 / 58	minus
Harvest21	ABC50300	656	1e-23	42 - 102	98	60 / 61	minus
Harvest35	U35_13861	1326	3e-25	1139 - 1198	100	60 / 60	plus
Harvest35	U35_48479	656	1e-23	42 - 102	98	60 / 61	minus

Contig Sequence (1326 bp)

>U35_13861 1326 Hv_44K_v2
TGGCTCACACTGAACAACTGCAGCAAGCACCGTTCAAGCTAGAGGGCACTAGGTTGAGCT
AGCTTAGCAATGGCCAAGGACATTGAGGCGGCACCCCAAGGGGGCGAGTTCTCCAGCAAG
GACTACTCGGACCCGCCCCCGGCGCCGATCGTGGACTTCGAGGAGCTGACCAAGTGGTCG
CTGTACCGCGCGGTGATCGCCGAGTTCGTCGCCACGCTCCTCTTCCTCTACATCACCGTG
GCCACCGTCATCGGGTACAAGCACCAGTCCGACCCCACCGTCAACACCACCGACGCGGCC
TGCAGCGGCGTCGGCATCCTCGGCATAGCATGGGCCTTCGGCGGCATGATCTTCGTCCTC
GTCTACTGCACCGCCGGCGTCTCAGGTGGACACATCAACCCGGCGGTGACCTTCGGGTTG
TTCCTGGCGAGGAAGGTGTCGCTCATCCGGGCGCTGCTCTACATCATCGCGCAGTGCCTC
GGCGCCATCTGCGGCGTCGGCCTTGTCAAGGGCTTCCAGAGCTCCTACTACGTGCGGTAC
GGCGGTGGCGCCAACGAGCTCAGCGCAGGCTACTCCAAGGGCACCGGTCTAGCGGCCGAG
ATCATCGGCACCTTCGTGCTCGTCTACACGGTCTTCTCCGCCACCGACCCCAAGCGCAAC
GCCCGTGATTCCCACATCCCGGTGCTGGCTCCTCTCCCAATCGGATTCGCTGTGTTCATG
GTCCACTTGGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCGAGAAGCTTGGGA
GCTGCTGTCATCTACAACACTGACAAGGCCTGGGATGACCAATGGATCTTCTGGGTGGGG
CCACTGATCGGCGCCGCCATTGCCGCCGCCTACCACCAGTATGTGCTGAGGGCCAGCGCC
GCCAAGCTCGGGTCCTACAGGAGCAACTAAGTCGCCCGTAGCTCCGGCCGGACGCGCGAG
GGGGGGCACTGAAGTGTAGATATGTGCGAAGAAGAAGGCCGCCTCCAGCCAATGCGCTAT
GGCTGCTCGATCCCACCGCTTGGTTCAGTGGCTCCAGTCTTCGCATCATCTGCTGCTACC
GTTCCTCGGCTTGTGCATATGTTGATGTGACCGTCCATTCGTATGTCGACGTGTTTCCGG
AGTTCGCCATGTTTGCTTGCTGCTGTTTCTTCCAAGTGTGCTTTTCTTTTGCTCGCTCTA
TGTATGTATGTATGTATGTATGTATGTATGTGGAGAATTTGGTAATCAAAGAATTGGTAC
CGTTTAAGAAAAAAAAAAAAAAAAAAATATAAGACCTTTTAGAGATTTAAAAAAAAAAAA
AAAAAA

Homology of Contig U35_13861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41860.2	289	0.0	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g49360.1	289	0.0
Arabidopsis v10	AT3G53420.1	287	2e-164	\| Symbols: PIP2A, PIP2, PIP2;1 \| plasma membrane intrinsic protein 2A \| chr3:19803906-19805454 REVERSE LENGTH=287