barSeed - Barley Seed Development Database

Probe CUST_34645_PI390587928

Source Contig U35_13866

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34645_PI390587928	Hv_44K_v2	AGCTAGAGCTCTAAGAAAAGGACAGATTAGGTTAAAATGGGCAAAGAGGTGGACGTGTCT	43	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62649.1	1267	2e-24	1133 - 1192	100	60 / 60	minus	ABC01216 ABC01222 ABC01223 ABC01225 ABC01228 ABC01237 ABC01242 ABC32067
JLOC1	JLOC1_41017.1	1381	8e-25	82 - 141	100	60 / 60	plus
Harvest21	ABC01217	504	3e-25	36 - 95	100	60 / 60	plus
Harvest35	U35_13866	587	3e-25	44 - 103	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_13866 587 Hv_44K_v2
AGAGTTAAGTTATTACCTGCCAAGTAGCCTTTGCATCCATCCTAGCTAGAGCTCTAAGAA
AAGGACAGATTAGGTTAAAATGGGCAAAGAGGTGGACGTGTCTGCCCTCGAGGCCGGCGG
CGCCCGGGACTACTCCGACCCTCCACCGGCGCCTCTTGTGGACGTCGATGAGCTGGGCAG
GTGGTCTCTGTACCGCGCGGTGATCGCGGAGTTCGTGGCCACGCTGCTCTTCCTCTACAT
CACGGTGTCCACCGTCATCGGGTACAAGCACCAGACGGACGCGTCGGCCTCGGGCCCCGA
CGCGGCGTGCGGCGGGGTGGGCGTCCTCGGCATCGCGTGGGCGTTCGGGGGCATGATCTT
CGTCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCGGCCGTGACGTT
CGGCCTCTTCCTGGCGCGCAGGGTGTCCCTGGTGCGCGCGCTGCTCTACATGGCCGCGCA
GTGCCTCGGCGCCGTCTGTGGCGTCGGGCTCGTCAGGGGGTTCCAGAGCGGGCTCTACGC
GCGCCACGGCGGCGGCGCGAACGAGGTCGGGGCCGGGTACTCGATCG

Homology of Contig U35_13866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26630.1	287	2e-93	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi1g28780.1	290	4e-92
Arabidopsis v10	AT5G60660.1	291	4e-73	\| Symbols: PIP2F, PIP2;4 \| plasma membrane intrinsic protein 2;4 \| chr5:24375673-24376939 REVERSE LENGTH=291