barSeed - Barley Seed Development Database

Probe CUST_34615_PI390587928

Source Contig U35_13878

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34615_PI390587928	Hv_44K_v2	TAGCCCGCATTCCTTTTCCTGTTTTAATTTAGCGACCATATGTATGATCGACCCAACGTC	822	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54419.2	3119	2e-24	356 - 415	100	60 / 60	minus	ABC01216 ABC01222 ABC01223 ABC01237 ABC01240 ABC01242
MLOC	MLOC_54419.1	2705	2e-24	357 - 416	100	60 / 60	minus	ABC01216 ABC01222 ABC01223 ABC01240
JLOC1	JLOC1_35029.1	1940	8e-25	1401 - 1460	100	60 / 60	plus
Harvest21	ABC01240	927	3e-25	46 - 105	100	60 / 60	minus	ABC01240
Harvest21	ABC01222	1259	3e-25	1133 - 1192	100	60 / 60	plus	ABC01222
Harvest35	U35_35890	820	3e-25	480 - 539	100	60 / 60	plus
Harvest35	U35_13878	927	3e-25	823 - 882	100	60 / 60	plus
Harvest35	U35_13825	1398	3e-25	1176 - 1235	100	60 / 60	plus

Contig Sequence (927 bp)

>U35_13878 927 Hv_44K_v2
GCTTTGGACTCCTTTGGGGCGGTGAAGCGCGCACTGAGCCCAATCCACGTCCACCCGCGT
GCGATGTGCCCGGAGGCAGAGGCAAAAGGGAGCCTTCACGCTCGTTGCTACTCCACCTAG
TTTCCTTGCTTTTGAATCGAAAGGGGGCGGCAAGTGGCCGGCCCTTCACGACTTTGGGTG
TCCTCCAGCAGTCACATGATGCGGACGGCCGAAGCAAGCACGCATGACCATGCCATGCTT
GAGGAACCAGCAACCTGAAAACGACCCGGCACGGGGAGTGCCGATCAGTTCAGTTCACAA
AGTAATTTGGGTCTCATGCATGTTATGTTTGGCTGTGTCTTCCTTTCTTCAGGTGTTGGC
GCCCCTCCCGATCGGCTTCGCCGTGTTCATGGTCCACCTGGCCACCATCCCGATCACCGG
CACCGGCATCAACCCGGCCAGGAGCCTGGGGGCCGCCGTCATCTACAACAAGGACAAGGC
CTGGGATGATCAGTGGATCTTCTGGGTCGGCCCCATGATCGGCGCGGCGATCGCGGCCTT
CTACCACCAGTACATACTCAGGGCCGGCGCCATCAAGGCCCTCGGCTCCTTCAGGAGCAA
CGCGTAACGAGTTATCCATGTGATGTGCATGCAAGATTGAAGCAATGGCGACCTGTGCTG
TGTCCATCCATCCAAAGAGAAAGCCGCTTTTGCAACTTCTCGACAGTTCAGTTGGCCGCT
GCAATGGTCGTGTTATTTATGTGTCGGCAGCTGCATATGCGTATGTGCCCAGTCATGCGT
GCCGTGTGTTGTAATTCGGTCCATGGGATCGCTTGTCTTAATTAGCCCGCATTCCTTTTC
CTGTTTTAATTTAGCGACCATATGTATGATCGACCCAACGTCNGGCCACCTTCTATCCAA
ATCATCAATCCGCCAAGCAAGAGATTC

Homology of Contig U35_13878 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g28760.1	291	3e-51
Arabidopsis v10	None