barSeed - Barley Seed Development Database

Probe CUST_34416_PI390587928

Source Contig U35_43011

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34416_PI390587928	Hv_44K_v2	TTCTCAAGGAAACACACATCAGTATTCTTCTTATGGTGATTGATACCAGAGTGGTAGTAC	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39224.1	745	2e-24	201 - 260	100	60 / 60	minus	ABC07126 ABC39121 ABC41063
MLOC	AK354961	1959	3e-21	623 - 676	100	54 / 54	plus	ABC07126 ABC39121 ABC40829 ABC41063 ABC49808
JLOC1	JLOC1_25564.1	585	8e-25	307 - 366	100	60 / 60	plus
Harvest21	ABC39121	578	3e-25	462 - 521	100	60 / 60	minus	ABC39121
Harvest21	ABC41063	645	6e-22	461 - 514	100	54 / 54	minus	ABC41063
Harvest35	U35_43011	578	3e-25	462 - 521	100	60 / 60	minus
Harvest35	U35_43860	645	6e-22	461 - 514	100	54 / 54	minus

Contig Sequence (578 bp)

>U35_43011 578 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCTTGTGCGCTTTGATAATGATCTCACTCGTAACCAAGCTGC
TTTGCTATTTCAATTTGCTCTGTAGTACCATCAATATACAATGTTCTTTCAGTTGAAGTA
TCACCAGGAGGGAAATGGAAAGGAATGACCTTGTTGTTAGCAATTTGCATCTGGAATTGC
TCAACACTAGGTTGAGGTGCATTGTACTTCCAATTAGGGATAGTGCCAAATGAGCCAGCA
TGAGCCTCTGCAAGAACATCACTTATCAACTGCTCAGCTCTGCTTATGTGGTCAGGAGTG
CCCGAAAGATCAACCAATCTTGTCTGTGACCAGGGTTGAAAATCCATGTCCCTTGTTACT
TGGATCTTTGCCCCTGACTGAAGTTGGATATGCTTTATAGTTTCTCCAGCTTTTCCAATG
ATAACACCAACCTTCCATTTGGGATATCAATCTTTTTTGTTGTACTACCACTCTGGTATC
AATCACCATAAGAAGAATACTGATGTGTGTTTCCTTGAGAAGATAAGGGTGGGATGGAAG
AACCATGGCGTGGAAACAAAACAACAACTCATTATATT

Homology of Contig U35_43011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13130.3	347	1e-53	protein\|KH domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi3g08410.1	693	1e-60
Arabidopsis v10	None