barSeed - Barley Seed Development Database

Probe CUST_34142_PI390587928

Source Contig U35_9499

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34142_PI390587928	Hv_44K_v2	GCTGGGAAGCGTATTCCTGGCTGAAACGTTTTATAGTTTTTGTTTTATTTAAATCTAGCT	540	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356131	2909	2e-24	555 - 614	100	60 / 60	plus	ABC13024 ABC17862 ABC20255 ABC20590 ABC20943 ABC24039 ABC26250
JLOC1	JLOC1_5948.1	1124	8e-25	555 - 614	100	60 / 60	plus
Harvest21	ABC20590	692	3e-25	541 - 600	100	60 / 60	plus	ABC20590
Harvest35	U35_9499	692	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_9499 692 Hv_44K_v2
GTCTCTCTCGACCGTAGCAAGCTCCCCGTAGCAGCAATTTGGTCGGAGATGTTCATCTTG
CTCACCTCCGGCAGCTTGGCCGCCGCGGCCTCTCCGGTCAAATTCGTCGCAGTCGTGCCT
GTCCATGCCAGCCTCCTCCTCCTTCATCCCCTAGCGGCTAGTAGGTCCTTTCCCCTTCAC
CGCAAGTGCCGGGGACCACTGTCTGCAAAGCCCTCTCGGAGGCCGACGCCGCCGTCCGCC
AAAGCCTGTGGCACCGGCGCCTCCCGTCACTCCTGTGCCCCTGGAGACCACCGGGTGGAC
AGCGAGGACCTCTTCGATCCATCCCCACGCCTTAGAGCCCGAGAGCTGTAGCGAGTCGCC
GACGAGGATCACCGGAGCGCCACCCTGGTTCTGCTACGGGAGGTAGAGGACAAACCCGAC
ACGTGGACCCCACCTATCGGTGAGCCAGCCAAGTGCCCCAGTGGCGCAGCCTCTCCTGGT
GCGTTTTCAGTGCAACAAAGGGTAGTTTCCCATAGCGTTTTTCGTGAATACGTTTTCTCT
GCTGGGAAGCGTATTCCTGGCTGAAACGTTTTATAGTTTTTGTTTTATTTAAATCTAGCT
TTGACCAGAAACTTTGACTGGCCATATATTTTTAAATAAAAACTCCAAATGAAATGATTA
TTTTTCCTACCTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_9499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None