barSeed - Barley Seed Development Database

Probe CUST_33281_PI390587928

Source Contig U35_33071

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33281_PI390587928	Hv_44K_v2	TTTGATCGATTTCCAGTTAAGCATCCTACCTAGCTGTAGCTGCTAAAACGGATCGCACGA	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368424	825	2e-24	648 - 707	100	60 / 60	plus	ABC01321 ABC01323 ABC01327 ABC01328 ABC01330 ABC01336 ABC01338 ABC01339 ABC01340
MLOC	MLOC_34485.3	831	2e-24	481 - 540	100	60 / 60	plus	ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340
MLOC	MLOC_34485.1	1777	2e-24	1322 - 1381	100	60 / 60	plus	ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340
MLOC	MLOC_34485.2	808	2e-24	661 - 720	100	60 / 60	plus	ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340
JLOC1	JLOC1_22241.3	844	8e-25	545 - 604	100	60 / 60	plus
JLOC1	JLOC1_22241.2	780	8e-25	481 - 540	100	60 / 60	plus
JLOC1	JLOC1_22242.2	4712	8e-25	3326 - 3385	100	60 / 60	minus
JLOC1	JLOC1_22242.1	4099	8e-25	2713 - 2772	100	60 / 60	minus
JLOC1	JLOC1_22241.1	3861	8e-25	1328 - 1387	100	60 / 60	plus
Harvest21	ABC01327	992	3e-25	647 - 706	100	60 / 60	plus	ABC01327
Harvest21	ABC01338	744	4e-24	68 - 125	100	58 / 58	minus	ABC01338
Harvest21	ABC35043	160	6e-22	65 - 124	97	58 / 60	minus
Harvest35	U35_33071	550	1e-23	375 - 434	98	59 / 60	minus
Harvest35	U35_14190	942	3e-25	671 - 730	100	60 / 60	plus

Contig Sequence (550 bp)

>U35_33071 550 Hv_44K_v2
TGGAATTGCGTCGTGCGATCCGTTTTAGCAGCTACAGCTAGGTAGGATGCTTAACTGGAA
ATCGATCAAATAAGAGTTTCGTCTTAAACTAATATGCAATGCACAATTCTCCTCCTGTCT
TCGGAGCACGGTTCGGCGCTCATTTGGCCATCATGACCTTGACGAACTCCTCGTAGTTGA
TCTGGCCATCACCGTCGACGTCAGCTTCACGGATCATCTCGTCCACCTCCTCGTCGGTGA
GCTTCTCGCCGAGATTCGTCATGACGTGGCGGAGCTCAGCAGCAGAGATGAAGCCGTTTT
GGAGCGGCCGCTCACAAGTTCACATAAAACACAAGAGGTCTGGAAACACACTGGAGAGCA
TAGCAGGAATTGCGTCGTGCGATCCGTTTTAGCAGCTACAGCTAGGTAGGATGCTTAACT
GGAAATCGGTCAAATAAGAGATTCGTCTTAAACTAATATGCAATGCACAATCCTCCTCCT
GTCTTCGGAGCACGGTTCGGCGCTCATTTGGCCATCATGACCTTGACGAACTCCTCGTAG
TTGATCTGGC

Homology of Contig U35_33071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None