barSeed - Barley Seed Development Database

Probe CUST_32934_PI390587928

Source Contig U35_13131

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32934_PI390587928	Hv_44K_v2	TGTTGTATGTATGGGGAATGGATAGAATCCTACTATCATGGGAAAGATGGAAATTGAAAA	437	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376837	3868	2e-24	1613 - 1672	100	60 / 60	minus	ABC04561 ABC09131 ABC22323 ABC44348
MLOC	MLOC_77520.1	1678	2e-24	16 - 75	100	60 / 60	minus	None
MLOC	MLOC_77520.2	1672	2e-24	16 - 75	100	60 / 60	minus	None
JLOC1	JLOC1_51703.2	1696	8e-25	1618 - 1677	100	60 / 60	plus
JLOC1	JLOC1_51703.1	1690	8e-25	1612 - 1671	100	60 / 60	plus
Harvest35	U35_13131	530	3e-25	438 - 497	100	60 / 60	plus

Contig Sequence (530 bp)

>U35_13131 530 Hv_44K_v2
GCCGAAATCTGGCAATGCCANCGGAGCAGTGGCAGCATCACTCAACCTGTTCATGTTAGC
CCCAGATAAATTATCATCTATGCTGAATCCCTTGGACAAGGATTCTGACCAAGATTCGCT
GCTGCTGGAGGTCCCTTGCAACACGCGGCACTCGGAAGCAGAGCTTCTTCTTTGCGGCCC
CCCACCATCTCAGCTCAGCTCCGTGACCGTAACCACAGCCTCTCCTCCGCGCAACCATAG
TCCTGGTTCCGTTGGCGATCAGCTTAGGAACAGGCATCAGTGGTAGTTCTGTTTACATTT
TGGTTCCTGGATCATCATCATACCATACCGTTCATCGATGATCGTCCTAACACGCACTTG
CCGAATTTGTTTGGGCTTGATTTTTTTTTTTTGGTATAGCATATATATATGGCTGGAGAA
ATTGTAACTTGTATATCTGTTGTATGTATGGGGAATGGATAGAATCCTACTATCATGGGA
AAGATGGAAATTGAAAAAAAAAGTTCACAGTGCAAAACAAAAAAAAAAAA

Homology of Contig U35_13131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None