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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_31193_PI390587928Hv_44K_v2AGATGACCCAGATCATGTTTGAGACCTTCAACACCCCCGCCATGTACGTCGCCATCCAGG471GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_7384.116032e-24486 - 54510060 / 60plus ABC01389 ABC01390 ABC01391 ABC01393 ABC01397
MLOCAK36979812247e-23387 - 4469859 / 60plus ABC01389 ABC01393 ABC01397 ABC45368
JLOC1JLOC1_4866.117678e-25495 - 55410060 / 60plus
Harvest21ABC353486313e-25472 - 53110060 / 60plus
Harvest21ABC224486266e-22408 - 4679758 / 60plus
Harvest35U35_392836313e-25472 - 53110060 / 60plus
Harvest35U35_275136266e-22408 - 4679758 / 60plus



Contig Sequence (631 bp)

>U35_39283 631 Hv_44K_v2
GGCTCCAGTCTTGTTAGATCCATCTTCGCCACAAGACAAGAGCAAACAACGCACAAGAGA
GGAGGAGGAGGAGTCCATCCGTCCGGAGAAAGAAGAAAGGAAGGAAGAAGAAGATGGCCG
ACGGCGAGGACATCCAGCCGCTGGTGTGCGACAACGGAACCGGTATGGTGAAGGCGGGGT
TCGCCGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTGGGGCGGCCGCGGCACA
CGGGCGTGATGGTGGGCATGGGGCAGAAGGACGCGTACGTGGGCGACGAGGCGCAGTCCA
AGCGTGGCATCCTCACCCTCAAGTACCCCATCGAGCACGGCATCGTCTCCAACTGGGACG
ACATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTCCGCGTCGCCCCCGAGGAGC
ACCCCGTCCTTCTCACCGAGGCTCCACTCAACCCCAAGGCCAACCGTGAGAAGATGACCC
AGATCATGTTTGAGACCTTCAACACCCCCGCCATGTACGTCGCCATCCAGGCCGTCCTCT
CCCTCTACGCCTCCGGACGAACCACCGGTATCGTGCTGGACTCTGGTGATGGTGTGAGCC
ACACGGTGCCCATCTACGAGGGGTACGCGCT



Homology of Contig U35_39283 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os11g06390.43783e-121protein|actin, putative, expressed
Brachypodium v1_2Bradi4g00260.13782e-122
Arabidopsis v10AT3G12110.13772e-122| Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377