barSeed - Barley Seed Development Database

Probe CUST_31172_PI390587928

Source Contig U35_49483

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31172_PI390587928	Hv_44K_v2	GCCCTATGATGTTTGGCACCATGAGGTGTTTATATGAATCAGTAACTCTGTAACTCGTAT	511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9262.1	238	2e-24	91 - 150	100	60 / 60	plus	ABC08668
MLOC	AK356234	1797	3e-21	1718 - 1777	97	58 / 60	plus	ABC07975 ABC07976 ABC08667 ABC08668
MLOC	MLOC_29321.1	208	3e-21	47 - 106	97	58 / 60	minus	ABC08668
JLOC1	JLOC1_6066.1	201	8e-25	91 - 150	100	60 / 60	plus
Harvest21	ABC51219	610	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_49483	610	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_49483 610 Hv_44K_v2
GCGGAGTGCGTTACAAGTGGAAGAAACTCTTTGAGGCAAAAACAGAAAAGCAAAAGCAAG
TTGAACAAAGAATGTCCGCGGGACTCAGAAACAAATATGAAGTAGCAAACGCCGGGACAT
GATCTTGCGGAAGATGGGCAACCATGCTTTGCTGCCAAAAGTCTCCTTCACACAGTGCCG
CCGGCAAACATGTCATGCAGCATTTGTTGATCAAACATGTGTTAGATGATGGAAAAGATC
ACACATGGCATTTGATTTCAAGTAATGATATTAGAAGTTTCACGGTGATGACCAGATCTT
GAGGTTCCACGGTGATGATGGAAAGATTCCATGGTGATGACCAGATCTTGAGGTTCTATG
CTGCGTCGCAGAGGCTGGTTCTTGGAAGTTTCTTGATTTCACCACAATTTTAGCAGTTTT
GTGTACCAGCTCTTTCAGCTTATTTGTAGCATGTGTGCTTCTGCACAATACTGAAGTTTT
GAACAGTGGTAGCCTGTAACAAACCTATAAAGCCCTATGATGTTTGGCACCATGAGGTGT
TTATATGAATCAGTAACTCTGTAACTCGTATTATTTTAATTGTTGGAGAGGAAAAGAAAA
GTAGAAGGAA

Homology of Contig U35_49483 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None