- Probe CUST_29842_PI390587928
- Source Contig U35_47827
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29842_PI390587928 | Hv_44K_v2 | TATCATTTTTCCGTAACCATGATCTTCTTCAGCTATTTCGTTTCCCGCAGTTGCCCACTG | 463 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.279 | 0.813 | 0.720 | 0.588 | 1.345 | 1.198 |
| Raw | 9.910 | 3.262 | 2.782 | 3.622 | 3.297 | 3.293 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361555 | 3086 | 7e-23 | 671 - 730 | 98 | 59 / 60 | plus | ABC09600 ABC09601 ABC15584 |
| MLOC | MLOC_57906.4 | 2971 | 7e-23 | 2307 - 2366 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 ABC15584 |
| MLOC | MLOC_57906.1 | 2965 | 7e-23 | 2197 - 2256 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 ABC15584 |
| MLOC | MLOC_57906.2 | 3176 | 7e-23 | 2408 - 2467 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 ABC15584 |
| MLOC | MLOC_57906.3 | 3010 | 7e-23 | 2284 - 2343 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 ABC15584 |
| MLOC | MLOC_57906.10 | 2034 | 7e-23 | 1266 - 1325 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 |
| MLOC | MLOC_57906.7 | 2720 | 7e-23 | 2220 - 2279 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 ABC15584 |
| MLOC | MLOC_57906.6 | 3036 | 7e-23 | 2312 - 2371 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 ABC15584 |
| MLOC | MLOC_57906.5 | 2955 | 7e-23 | 2228 - 2287 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 ABC15584 |
| MLOC | MLOC_57906.8 | 3018 | 7e-23 | 2313 - 2372 | 98 | 59 / 60 | minus | ABC09600 ABC09601 ABC12308 ABC15584 |
| JLOC1 | JLOC1_37603.4 | 3100 | 4e-23 | 711 - 770 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_37603.3 | 2999 | 4e-23 | 704 - 763 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_37603.2 | 3036 | 4e-23 | 647 - 706 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_37603.1 | 2937 | 4e-23 | 642 - 701 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC49299 | 757 | 3e-25 | 464 - 523 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47827 | 757 | 3e-25 | 464 - 523 | 100 | 60 / 60 | plus |
Contig Sequence (757 bp)
>U35_47827 757 Hv_44K_v2 GGCGCCCTGCCGCCGTCGTTTGAGGCAGCCCCCGTTGTCACAATCGAGTAGCCACGCAAG GTGACATATCCCCACATGACGGAGTGGTTAGAAGGGCTCGGTGTAGAAATGGAGAGATCA GACATGTCTTTCTCAGTCAGTAAACAACCGGAAGGCAACGGAAGAGGATGTGAGTGGGGA AATGGCAACGGTATCTCAAGCCTCTTTGCGCAAAAATCCAATATATTGAAAACAAGTTTT TGGCGCATGCTCGGCGAGATACTCAAGTTCAAGAACGATGCTCTGGCGTACCTGGAGTAC CATCAAGATAACCCTGATCTGTACTGCAATGAGACATTGGGACAATTCATTCAGTCACAT GGATATTCCCTATTATTCCAAGAGGCCTATCTTATTCCAGTCTGTGCAGGCATGTGGTCA TCTCCATCACAAGGCGTTTTGAGCTTGTCTGCTTTCTTCGTGCTATCATTTTTCCGTAAC CATGATCTTCTTCAGCTATTTCGTTTCCCGCAGTTGCCCACTGTCAAGGCTCGTTCGCAC TCCTTTGTAGAAAAAGTAAAGGGAGAATTGGAGAGCCTGGGCTGTCGAATGAAAACCAGC TGTCGGGTCAAATCTGTTTCAAGCCTTGATGGAACATCTGGCTACAGAGTCTTGGAGAAT GATGGTTCAGAGGAAACATACGACAGTGTCATCTTTTGGGGTCCATGCACCCAATGCTCT CAAAGTGTTAGGAGCTGAAGCTACACATGATGAACTG
Homology of Contig U35_47827 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g16650.1 | 838 | 3e-66 | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| Brachypodium v1_2 | Bradi5g02490.1 | 795 | 1e-73 | |
| Arabidopsis v10 | AT3G23530.1 | 867 | 2e-64 | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8437472-8442597 FORWARD LENGTH=867 |