barSeed - Barley Seed Development Database

Probe CUST_29315_PI390587928

Source Contig U35_16299

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29315_PI390587928	Hv_44K_v2	AAATGCACATCCACAAACCAGGTTATCCGAGATAACACCAATAAAATATTTAAGCCAGAA	449	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21803.1	1237	2e-24	331 - 390	100	60 / 60	minus	ABC01964 ABC49788
MLOC	AK359213	1450	2e-23	1393 - 1450	100	58 / 58	plus	ABC01964 ABC01965 ABC43517 ABC49788
JLOC1	JLOC1_15116.2	918	8e-25	658 - 717	100	60 / 60	plus
Harvest21	ABC01964	1174	3e-25	1078 - 1137	100	60 / 60	plus	ABC01964
Harvest35	U35_16299	546	3e-25	450 - 509	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_16299 546 Hv_44K_v2
TGGGGAGCTCAACTTGCAGTGTTGGCACAAGCATGTGAAGATGCTTCAAAGGATGGAATT
TCTTGCGAGCTCATAGATCTAAGAACGCTAATTCCATGGGACAAGGAAACAGTCGAGGCC
TCTGTCAGCAAGACCGGAAAGCTTCTTGTTAGTCATGAGGCCCCAGTCACAGGAGGGTTT
GGTGCAGAAATCGCTGCATCCATTGCTGAGCGCTGCTTCCAGAGGTTAGAAGCGCCTGTC
GCGAGGGTCTGCGGCCTCGACACCCCTTTCCCACTTGTTTATGAACAATTCTACATGCCC
ACAAAGAACAAGATCGTGGATGCTATTAAAGCAACTGTAAATTACTGAGGTTGGTGCACG
AGGACATCAAGCTGGTATATATTGCTGTATGTAGAAACTGCCATTATGTATGTATGTGTA
TAAGTGACTATATTGCTGGTCTGTGGCCTAAATGCACATCCACAAACCAGGTTATCCGAG
ATAACACCAATAAAATATTTAAGCCAGAAGGTAAATATCATAAAAAAATAAAAAAAAAAA
AAAAAA

Homology of Contig U35_16299 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07470.1	371	4e-71	protein\|transketolase, putative, expressed
Brachypodium v1_2	Bradi1g56150.3	344	2e-72
Arabidopsis v10	AT1G55510.1	352	1e-63	\| Symbols: BCDH BETA1 \| branched-chain alpha-keto acid decarboxylase E1 beta subunit \| chr1:20723482-20725505 FORWARD LENGTH=352