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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_29256_PI390587928Hv_44K_v2CTGCTTCATCCTATGGCTATAGAACAGTTACATATTAGTTGGACGGTTGGAATATTTTTA341GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_60284.328642e-24184 - 24310060 / 60minus ABC12128 ABC38349 ABC44948
MLOCMLOC_60284.619522e-24183 - 24210060 / 60minus ABC12128 ABC38349 ABC44948
MLOCMLOC_60284.823452e-24175 - 23410060 / 60minus ABC05973 ABC38349
MLOCMLOC_60284.222582e-24184 - 24310060 / 60minus ABC05973 ABC12128 ABC38349 ABC44948
MLOCMLOC_60284.427572e-24184 - 24310060 / 60minus ABC05973 ABC12128 ABC38349 ABC44948
JLOC1JLOC1_39299.523778e-252006 - 206510060 / 60plus
JLOC1JLOC1_39299.428638e-252492 - 255110060 / 60plus
JLOC1JLOC1_39299.123588e-251987 - 204610060 / 60plus
Harvest21ABC383495463e-25342 - 40110060 / 60minusABC38349
Harvest35U35_425985463e-25342 - 40110060 / 60minus



Contig Sequence (546 bp)

>U35_42598 546 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAGATTGTAAATAAAATGTATATTTCATTTCAGTAGCATAT
CACATCAAATACAATACATCATCCAACGACTCCACGCATTAAAGTTCAACGCCTAAAAAA
GGCACATCAAAATAATTTTACATGTGCACAACAGAATACTTCTACAAGTGCAAGGGCACA
GAAAAAGGACCCAACAAGTGCACAATCACACATAAAGAGAGTTCCACAAAGATAGGATAA
GAACCACAAGTTTCTCCTCATCGTCTTCCTCTGCTCAATATGCTCTTGCCATTGTCGCCT
GCAAGAAGAAGATGATGCAACTCCTAGTTAAACCTAGAAAGTAAAAATATTCCAACCGTC
CAACTAATATGTAACTGTTCTATAGCCATAGGATGAAGCAGGAGACGTCTACCCCATTAG
TCTTTCCTTCTACGCTTGTGAAAAGAAAAAAGAATCTACAGGAGACTACTAGATCGTAGA
TCGCTGCGACGCGCAGCGCCCATCTATTTTGGCTCTTGTAATTATTAGGTATATGAAACA
AAAAAA



Homology of Contig U35_42598 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None