barSeed - Barley Seed Development Database

Probe CUST_29017_PI390587928

Source Contig U35_14001

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29017_PI390587928	Hv_44K_v2	GTGGTATGATGTGATGTGCGATGTTTAAGGCTACTCGGTAGTTGCTCGATTATGTTTTTT	624	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371280	763	2e-24	621 - 680	100	60 / 60	plus	ABC01601 ABC01603 ABC01606
MLOC	AK252264.1	728	2e-24	644 - 703	100	60 / 60	plus	ABC01601 ABC01603 ABC01606
MLOC	MLOC_64103.1	1285	2e-24	533 - 592	100	60 / 60	minus	ABC01601 ABC01603 ABC01606
JLOC1	JLOC1_42046.1	1047	8e-25	281 - 340	100	60 / 60	minus
Harvest21	ABC01606	795	3e-25	625 - 684	100	60 / 60	plus	ABC01606
Harvest35	U35_14001	784	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (784 bp)

>U35_14001 784 Hv_44K_v2
CGCCGCCGCCTCTCCCCCCTGATCCCGCCGCCGCCGCCGCTGCCGCTGCCGCGCTCCCAC
CAGGCACCACCGCAAACATGGCTGCTGTCCTCACCCGCCCGACGCCGGGCACGGTCCAGT
GCTTCGGGCGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGGCTCA
TCAAGGTGAACGGCGCCCCCATCGAGCTGATCCGCCCGGAGATGCTCCGCCTCAAGGCCT
TCGAGCCCATCATGCTCGCCGGCCGCTCCCGCTTCAAGGACATCGATATGAGGATCCGCG
TCCGCGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGTCAGGCTGTCGCCAAGGCGC
TCGTCGCCTACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCT
TCGCCCGCTACGACCGTACCCTCCTCGTCGCCGATCCCCGTCGCTGCGAGCCCAAGAAGT
TCGGTGGTCGCGGCGCCCGAGCGAGGTTCCAGAAGTCTTACCGTTGATTGGCCTGCAGGA
TCGTCGACTATTGGGTGGTTTTCTCTGATTTACCTCCCCACTTTTAGACTCCGTATGATT
AGTTTCGAACCTTGGCAAGATATTGTGGTATGATGTGATGTGCGATGTTTAAGGCTACTC
GGTAGTTGCTCGATTATGTTTTTTTTTTACTTGTTACCTATGTTGAGGAATTTTGATATG
GTTGCGTGCTTGCACTATATTTTATGCTATGTTTCAGTTTTCATGCTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_14001 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03090.1	150	1e-96	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi4g43980.1	150	5e-97
Arabidopsis v10	AT2G09990.1	146	9e-74	Ribosomal protein S5 domain 2-like superfamily protein \| chr2:3781442-3781882 FORWARD LENGTH=146