barSeed - Barley Seed Development Database

Probe CUST_289_PI415269222

Source Contig TA36401_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_289_PI415269222	Hv_44K_v2	TTATCGTGAATTTCTTATAGGCCTTTTCCTTGGATGTGTTTCTACCTCTTGGGTCTGTGT	854	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57640.2	1071	2e-24	973 - 1032	100	60 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
MLOC	MLOC_57640.1	1968	2e-24	1867 - 1926	100	60 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862 ABC36918
MLOC	MLOC_57641.2	3588	2e-24	3487 - 3546	100	60 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
JLOC1	JLOC1_37384.1	1168	8e-25	1066 - 1125	100	60 / 60	plus
Harvest21	ABC03165	955	3e-25	864 - 923	100	60 / 60	plus	ABC03165
Harvest35	U35_15257	955	3e-25	864 - 923	100	60 / 60	plus

Contig Sequence (917 bp)

>TA36401_4513 917 Hv_44K_v2
CTAAAGGGGAANATGGCGGTACAAGGGCGGAGGACGACTAGCGACTACCTGTTCAAGGTG
GTGCTGATCGGGGACTCCGGGGTGGGCAAGTCCAACCTGCTCACCCGCTTCACCCGCAAC
GAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCAC
GTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTACCGG
GCGATCACGAGCGCGTACTACCGCGGGGCGGTCGGCGCCCTGGTCGTCTACGACGTCACG
AGGCACGTCACATTCGAGAACGTCGAGAGGTGGCTGAGGGAGCTCAAGGACCACACGGAC
GCCAACATCGTGATCATGCTCGTGGGGAACAAGGCGGACCTGCGCCACCTCAGGGCCGTC
CCTTCCGAGGACGCCAAGGCGTTCGCCGAGAGGGAGAACACCTTCTTCATGGAGACGTCC
GCCCTGGAGGCCATGAACGTCGAGGACGCCTTCACCGAGGTGCTCTCCCAGATCTACCAC
GTGGTGAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGCCTCCCAAGGGCAAG
ACCATCAGCGTCGGCTCCAAGGACGACGTGTCCGCGGTGAAGAAATCCACCTGCTGCTCG
TCTTAGCTTAAGCTCAGGATGGTGGCATCTTATACAGTAGGGGGGAGGGCACTATGTTAT
TGCAGTCATAGTCCTCATTTGTATTCATGCGCTATCGAGTGTCTCAATGTTCATTTTGCC
ATATTTTTCATACATTTGATTCGTTCACGACTACAGCTTTTGCTGGTATAGTTTAGGGGT
TTGGAAGTGTGAGGTTATCGTGAATTTCTTATAGGCCTTTTCCTTGGATGTGTTTCTACC
TCTTGGGTCTGTGTATT

Homology of Contig TA36401_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48980.1	218	2e-136	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g16480.1	217	7e-141
Arabidopsis v10	AT5G60860.1	217	1e-131	\| Symbols: AtRABA1f, RABA1f \| RAB GTPase homolog A1F \| chr5:24484750-24485565 FORWARD LENGTH=217