barSeed - Barley Seed Development Database

Probe CUST_28988_PI390587928

Source Contig U35_14014

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28988_PI390587928	Hv_44K_v2	GGTAGTATAACAGATGGTACAAGCTTTGTGCTAGATAATAGAAGTTTTGATATGCCAGTC	815	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7610.2	2227	7e-23	865 - 924	98	59 / 60	plus	ABC01601 ABC01603 ABC01606
JLOC1	JLOC1_5030.1	1145	4e-23	879 - 938	98	59 / 60	plus
Harvest35	U35_14014	903	3e-25	816 - 875	100	60 / 60	plus

Contig Sequence (903 bp)

>U35_14014 903 Hv_44K_v2
CTCCGCGCCGCCGCCCAAAACCCCGACCCGCGCCGCCGCGCCGCCGAGCACACAGCAACC
AAGCACACCGCCGCGCTCACAGCAACCAAGCAGACGGCCGCAACCACCATGGCAGCCGTT
CTCACTCGCCCGACGCCTGGCACCGTCCAGTGCTTCGGCCGGAAGAAGACCGCTGTCGCC
GTGGCCTACTGCAAGCCCGGTCGCGGCCTCATCAAGGTCAACGGCGCGCCCATCGAGCTC
ATCCGCCCCGAGATGCTCCGCCTCAAGGCCTTCGAGCCTATCCTGCTCGCCGGGAGGTCG
CGCTTCAAGGACATCGACATGCGCATCCGCGTCCGCGGCGGCGGGAAGACGAGCCAGATC
TACTCCATCCGTCAGGCCATCGCCAAGTCGCTCGTCGCCTACTACCAGAAGTACGTCGAT
GAGGCCGCCAAGAAGGAGGTGAAGGAGATCTTCGGCCGCTACGACCGGACGCTTCTCGTC
GCCGACCCCCGCCGCTGCGAGCCCAAGAAGTTCGGCGGTCGTGGCGCCCGTGCTCGTTTC
CAGAAGTCTTACCGTTGATCTACTGCCAGATCACCTCTTGGGTATGGCGGTGGTGGCGTA
CTGCCTGTCTACTTATCTATCTACCTTTTGCGGCTAGTAGTTTCCCATCTTTTGGTCAAT
GAAATGGATTGTCAGGTGCCCGTGCAGTATCATTTTGCTTTATGCCTAGTTAATGGGATT
ATGTTATGTTTATCTTGTGTTAATGATGAGACTGGATGTTTGGATGAAGTTTAAAAAAAA
AAAAAAAAACTTCGTTCTGTTTGCGCGTGATTTTTGGTAGTATAACAGATGGTACAAGCT
TTGTGCTAGATAATAGAAGTTTTGATATGCCAGTCAAAAAAAAAACAAAAAAAAAAAAAA
AAA

Homology of Contig U35_14014 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03090.1	150	6e-94	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi4g26140.1	150	4e-97
Arabidopsis v10	AT2G09990.1	146	4e-73	Ribosomal protein S5 domain 2-like superfamily protein \| chr2:3781442-3781882 FORWARD LENGTH=146