barSeed - Barley Seed Development Database

Probe CUST_28986_PI390587928

Source Contig U35_14016

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28986_PI390587928	Hv_44K_v2	CCACTGCAAACATCTCCTTAATTTCGGAATTGTTAATGACCCTGCATGTTGCAATCAACA	1039	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64774.1	3207	2e-24	2027 - 2086	100	60 / 60	minus	ABC01601 ABC01603 ABC01606
JLOC1	JLOC1_42566.1	1608	8e-25	403 - 462	100	60 / 60	minus
Harvest35	U35_14016	1276	3e-25	1040 - 1099	100	60 / 60	plus

Contig Sequence (1276 bp)

>U35_14016 1276 Hv_44K_v2
CTACGCGCCGCCACCCAAAACCCTAGCCCGCGCCACCGCGCTCACCGCAGCCAAGCGCCC
GCCGCAGCCACCATGGCAGCCGTTCTCACCCGCCCGACGCCGGGCACCGTCCAGTGCTTC
GGCCGGAAGAAGACCGCCGTCGCCGTGGCCTACTGCAAGCCCGGGCGCGGCCTCATCAAG
GTCAACGGCGCGCCGATCGAGCTCATCCGCCCCGAGATGCTCCGCCTCAAGGCCTTCGAG
CCGATCCTGCTCGCCGGCAGGTCCCGCTTCAAGGACATAGACATGAGAATTCGCGTCCGC
GGCGGCGGGAAGACCAGCCAGATCTACTCCATCCGTCAGGCCATCGCTAAGTCCCTCGTC
GCCTACTACCAGAAGTACGTCGACGAGGCCGCCAAGAAGGAGGTGAAGGAGATCTTCGGC
CGCTACGACCGCACGCTCCTCGTCGCCGACCCGCGCCGCTGCGAGCCGAAGAAGTTCGGT
GGTCGCGGTGCCCGCGCGCGTTTCCAGAAGTCCTACCGTTGAGCTCCGGCGAGATCTCTT
GTTTGGTATGGCGGCGGTGGTGTACTACTTGCATGCCTATCTATCTACCTTTTACCGCTA
GTAGTTTTCTCATATTTTGGACAATGAATTGGATATGATGATATCTAAGCACTTTGGTTG
TCTTCAATATCCAGCCTAGTTGAAGGTTTTCTGTTATGATAATCTGATGTTGCTGATGAA
AAAAAAAAAAAAGTGTTTTGTTTGAGCTTAATAATTTGTTTCCAACTTTTTGAACTTGAT
ACTTAGTTGAATAGATAGAACAGCTTTATAGAGAGAAACTGTGGTATGATATGCCAAACA
TGTCTTGTAGTTGCGTTGCAATTATATTGGAATATTATTTATCAATCATCTTGACATTAT
TCTTTCATTTCCGATGATATTTCTGTAGTAGGTGAGCCAACATGACCTCTTGGGCTGCTG
CTGTCTTCACAGTTTATTATGCCCCTGATATTTTGATCTTACAGTTTCTGATATTATGTT
CCTTTATCTATGTGTATTTCCACTGCAAACATCTCCTTAATTTCGGAATTGTTAATGACC
CTGCATGTTGCAATCAACATTGATGCTAATGTTATGATTGTATCCAGTTATTATGATTCA
TTGTTGTTTTGGTGTTGTTTTTAGTTAAACACTTGTATCAGGGTTAGTTTAAGAGGTGAA
CAGTAAAATTGTAACAAAACTCTCTGGCCCTCTATGTGGGAAGTTATGTCCTTGTGTATG
AGCGGCCGCTCGAGCA

Homology of Contig U35_14016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03090.1	150	4e-92	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi4g26140.1	150	2e-95
Arabidopsis v10	AT2G09990.1	146	1e-71	Ribosomal protein S5 domain 2-like superfamily protein \| chr2:3781442-3781882 FORWARD LENGTH=146