barSeed - Barley Seed Development Database

Probe CUST_27520_PI390587928

Source Contig U35_16463

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27520_PI390587928	Hv_44K_v2	TCTCACATTGTTAATGTGCCCTTCCATACCTTCTTATTGGCAACTCTTATCGGTCTCATC	639	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248142.1	2674	2e-24	657 - 716	100	60 / 60	plus	ABC05504 ABC07976 ABC08667 ABC08668
MLOC	AK374941	3368	2e-24	1415 - 1474	100	60 / 60	plus	ABC05504 ABC07976 ABC08667 ABC08668
MLOC	AK249899.1	1357	3e-21	664 - 723	97	58 / 60	plus	ABC05504
Harvest21	ABC05506	1024	3e-25	648 - 707	100	60 / 60	plus
Harvest21	ABC05505	937	6e-22	245 - 304	97	58 / 60	plus
Harvest21	ABC05504	1423	6e-22	741 - 800	97	58 / 60	plus	ABC05504
Harvest35	U35_16463	838	3e-25	640 - 699	100	60 / 60	plus
Harvest35	U35_16462	1419	6e-22	741 - 800	97	58 / 60	plus

Contig Sequence (838 bp)

>U35_16463 838 Hv_44K_v2
AACACCGCCGCCGCTCCCGATTCACCCTGCCTCAGCCGAATTTCCATCGTTCTCCCTTCC
GCTCCTCGCCTCGCCCGGACCGCGGCCGGATTCCCCCAGGAGGAGGAGGAGGAGGAGGGT
ATGGGGAGGGAGGACCGGTTCCCGCTCTTGGAGGCCGCGCTCGGCGCCGGGGTCGCCGCC
GTCTTCACCGCGGGCCTCGTCGGGGTCTACCTCTCCATGCCGGACTCCGACTACAGCTTC
CTCAAGTTGCCCCGCAACCTCCACGAACTACAAATCCTCACTGGCCATGTTGAGAACTAT
ACGAGTGACTACACCGTACAGGTGTTGATAGGTTACTGTGTTGTGTACATTTTCATGCAG
ACCTTCATGATCCCAGGGACAATATTCATGTCATTGCTTGCTGGTGCTCTATTCGGGCAA
CTCCAGGGCGTGGTTCTGGTTGTCTTTGCTGCCTCCGCTGGTGCTTCTTCATGCTATTTC
CTGTCAAAACTGATTGGAAAACCGCTGGTGTTCGTGCTGTGGCCAGACAAGCTCATGTTT
TTCCGGAAGCAGGTTGCCAAAAGAAGAGAAAAGCTGTTGAATTACATGCTTTTCCTGAGG
GTCACCCCAACATTGCCAAATACCTTCATCAACTTAGCATCTCACATTGTTAATGTGCCC
TTCCATACCTTCTTATTGGCAACTCTTATCGGTCTCATCCCAGCAGCCTACGTGACCGTG
AGGGCTGGGATTGCTCTGGGAGAGCTAACATCGCTCAGCGACCTGTACGACACCCAGTCA
GTAGCTCTGCTGTTCTTGATCGGCGTCGTCTCAGTCACACCAGCATTGCCGAGGAAGG

Homology of Contig U35_16463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g50216.1	255	1e-118	protein\|SNARE associated Golgi protein, putative, expressed
Brachypodium v1_2	Bradi5g20030.1	255	2e-119
Arabidopsis v10	AT4G17790.1	264	2e-97	SNARE associated Golgi protein family \| chr4:9891425-9892675 FORWARD LENGTH=264