barSeed - Barley Seed Development Database

Probe CUST_27197_PI390587928

Source Contig U35_45240

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27197_PI390587928	Hv_44K_v2	ACTACAAAAAGTGTTTGTAAGATGTTACATAGAGGTACTTGACGCGAGTCCCTCCAGGGC	276	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67022.1	866	2e-24	401 - 460	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
MLOC	MLOC_67022.3	1117	2e-24	619 - 678	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
MLOC	MLOC_67022.4	983	2e-24	485 - 544	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
MLOC	MLOC_67022.5	1901	2e-24	1403 - 1462	100	60 / 60	plus	ABC01488 ABC11000 ABC45008 ABC45560
MLOC	MLOC_67022.2	1814	9e-22	1405 - 1466	97	60 / 62	plus	ABC01488 ABC11000 ABC45008 ABC45560
JLOC1	JLOC1_44211.4	896	8e-25	367 - 426	100	60 / 60	plus
JLOC1	JLOC1_44211.3	993	8e-25	464 - 523	100	60 / 60	plus
JLOC1	JLOC1_44211.2	1127	8e-25	598 - 657	100	60 / 60	plus
JLOC1	JLOC1_44211.1	1939	8e-25	1410 - 1469	100	60 / 60	plus
Harvest21	ABC43847	386	3e-25	277 - 336	100	60 / 60	plus
Harvest21	ABC11000	974	3e-25	533 - 592	100	60 / 60	plus	ABC11000
Harvest35	U35_45240	386	3e-25	277 - 336	100	60 / 60	plus
Harvest35	U35_16442	974	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (386 bp)

>U35_45240 386 Hv_44K_v2
CCGTCGGACCCCTGTCCCCTCTCCCCAATTGGACCGTTGCCGCCGCCGCCGCCCACCTAC
GGCGGCCAATCCCGCCTCCTTGCCTTCATCGACGACCACCCGCTCCCACCGCCCGCGGCT
ATACCGTCCTGTCGACCACCGGTGGCCTGCTCGCCGCTTTTGCAGTGGAAGGGCAAGTGA
AAGAGAAGACTCGTTGGTGCCAACTGCTGAAAGACCTCAGTGAGAAATTTAAGGCGTTGA
AGATAGAGCACCAGATGTTACTGAAAGAATCAGTGGACTACAAAAAGTGTTTGTAAGATG
TTACATAGAGGTACTTGACGCGAGTCCCTCCAGGGCGCGAGAGGGTCGCTCGTGGGCGTG
CCGTGCCGCAGGGCTTGGACGGGAGG

Homology of Contig U35_45240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None