barSeed - Barley Seed Development Database

Probe CUST_2717_PI390587928

Source Contig U35_14210

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2717_PI390587928	Hv_44K_v2	TTTTCCACAGTGTAATAATTTGCAGTTTCCCACATCGGCATCTTCATTTTTAACTGCAAA	1500	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8049.1	606	2e-24	543 - 602	100	60 / 60	plus	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC38566
JLOC1	JLOC1_5339.1	731	3e-24	673 - 731	100	59 / 59	plus
Harvest21	ABC00393	1554	3e-25	1481 - 1540	100	60 / 60	plus	ABC00393
Harvest35	U35_14210	1574	3e-25	1501 - 1560	100	60 / 60	plus

Contig Sequence (1574 bp)

>U35_14210 1574 Hv_44K_v2
ACCAAAATCCACATCCAACGAGCTGCAAAGCAGAAGCAGCAACAAAGGTCAAAAGAGCGA
TCTTTCTCTTTGAGTTCCCGCAGCGATCGAGTGTAAGTTAATGGCGACCGCCGGGAAGGT
GATCAAGTGCAAAGCGGCGGTGGCATGGGAGGCCGGGAAGCCGCTCTCGATCGAGGAGGT
GGAGGTGGCGCCGCCGCAGGCCATGGAGGTGCGAGTCAAGATCCTCTACACCGCCCTCTG
CCACACTGACGTCTACTTCTGGGAAGCCAAGGGGCAAACTCCGGTTTTCCCAAGGATCTT
AGGCCATGAGGCTGGAGGTATTGTTGAGAGCGTCGGAGAGGGCGTGACCGAGCTCGTGCC
AGGTGACCATGTCCTGCCGGTGTTCACTGGCGAGTGCAAGGATTGTGCTCACTGCAAGTC
AGAGGAGAGCAACCTCTGTGACCTCCTCAGGATCAATGTCGACCGGGGCGTGATGATCGG
CGATGGGCAGTCCCGCTTCACCACCGGTGGGAAACCGATATTCCACTTCGTCGGAACCTC
TACCTTCAGCGAGTACACCGTGATCCATGTTGGGTGCCTAGCGAAGATTAACCCCGAGGC
GCCCCTTGACAAAGTTTGTGTTCTCAGCTGCGGTATCTCAACTGGTCTTGGTGCGACTCT
CAATGTCGCAAAACCGAAAAAGGGTTCGACGGTGGCAATTTTTGGTCTTGGAGCTGTAGG
CCTTGCTGCCATGGAAGGGGCCAAGATGGCTGGGGCATCAAGGATCATTGGTGTGGACTT
GAACCCTGCAAAGTACGAACAAGCTAAGAAGTTTGGCTGCACAGACTTTGTAAACCCAAA
GGACCACACCAAGCCAGTGCAAGAGGTGCTTGTCGAGATGACAAACGGCGGAGTCGACAG
AGCAGTGGAGTGTACGGGACACATTGACGCCATGATATCCGCCTTCGAATGCGTTCACGA
TGGGTGGGGCGTGGCCGTGCTGGTGGGCGTCCCGCACAAGGAGGCGGTGTTCAAGACACA
CCCGATGAACTTCCTCAACGAGAGGACCCTGAAGGGCACCTTCTTCGGCAACTACAAGCC
GCGCACTGACCTCCCGGAAGTCGTCGAGATGTACATGAGGAAGGAGCTGGACCTGGAGAA
GTTCATCACGCACAACGTGCCATTCTCGCAGATCAACACGGCGTTCGACCTCATGCTCAA
GGGAGAGGGACTTCGCTGCGTCATGAGGATGGACGAGTAGATCGACTGATCGAGCTTCTT
CGTCACATCCCTCGCTGCTTTCAGATTTGGTGCTCGAGAAAAACGAACAAAAAAAGTTTG
TAAGATCTTACCTCCGGTAATAATGTATAGTGAGCATGTGTTGAGCTCTTTTTTGTCACA
AAGAACCAACATGTATGTGTTTTGTCACAAGGAACCAACATGTATGGTTTGATCTTTATT
TTCAGTGTGTCGCGATCGCGACGCGACCGTTTGAGCAATCTGTTTGGGCGTACATGAACA
TTTTCCACAGTGTAATAATTTGCAGTTTCCCACATCGGCATCTTCATTTTTAACTGCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_14210 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g10510.1	380	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g22620.1	380
Arabidopsis v10	AT1G77120.1	379	\| Symbols: ADH1, ADH, ATADH, ATADH1 \| alcohol dehydrogenase 1 \| chr1:28975509-28977216 FORWARD LENGTH=379