barSeed - Barley Seed Development Database

Probe CUST_2702_PI390587928

Source Contig U35_14225

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2702_PI390587928	Hv_44K_v2	TCTCTCTCGCAACTGCCTGGTTCCATCGAGACTTCAAGATACAGTGTTGATCAAACCAAT	114	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_477.3	4582	2e-24	3085 - 3144	100	60 / 60	minus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01803 ABC01805
Harvest21	ABC01796	702	3e-25	115 - 174	100	60 / 60	plus
Harvest35	U35_14225	702	3e-25	115 - 174	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_14225 702 Hv_44K_v2
CCTACTCCAGCGAGCTCTTCTCTCCCTCACGGCTCCTCCACAATTTCATCAGTCAATCGC
CACATCAAAAATCCAGCTGACACGGTAAAGAGCACCAGTCTCTACTCCATCCCTTCTCTC
TCGCAACTGCCTGGTTCCATCGAGACTTCAAGATACAGTGTTGATCAAACCAATGGCCGC
CAACGGCAGCGATGGTGTCTGCGTGGCCAAGCCGCGGAGTGCTGACCCGCTCAACTGGGG
GAAGGCGGCGCAGGAGCTGTCGGGGAGCCATCTGGACGCCGTCAAGCGCATGGTTGAGGA
GTACCGCAGGCCGGTAGTGGTTATGGAGGGTGCCAGCTTGACCATCGCCCAGGTCGCGGC
GGTGGCCACGGCCGGCGGTGCCAGGGTGGAGCTCGACGAGTCCGCCCGCGGCCGTGTCAA
GGAGAGCAGCGACTGGGTGATGACCAGCATGGCCAACGGCACCGACAGCTACGGCGTCAC
CACCGGCTTCGGCGCCACCTCCCACCGGAGGACCAAGGAGGGCGGCGCTCTGCAGAGGGA
GCTCATCCGGTTCCTTAACGCCGGGGCGTTCGGCACCGGCAGCGACGGTCATGTGCTGCC
AGCGGCCACCACGCGCGCGGCGATGCTTGTCCGCGTCAACACCCTGCTCCAAAGGTACTC
CGGCATCCGCTTCGAGATTCTTGAGACCGTCGCCACGCTGCT

Homology of Contig U35_14225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43800.1	715	1e-88	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716	7e-90
Arabidopsis v10	AT3G53260.1	717	6e-60	\| Symbols: PAL2, ATPAL2 \| phenylalanine ammonia-lyase 2 \| chr3:19744256-19746619 REVERSE LENGTH=717