barSeed - Barley Seed Development Database

Probe CUST_2698_PI390587928

Source Contig U35_14229

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2698_PI390587928	Hv_44K_v2	TCCCACAAGGCCAGAACTGCTCTATCCAGACTTCAAGATCCATTGTTAATCAAGCCAATG	106	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361880	2575	7e-23	113 - 172	98	59 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01805
MLOC	MLOC_16977.1	484	7e-23	114 - 173	98	59 / 60	plus	ABC01797 ABC01800
JLOC1	JLOC1_11724.1	468	4e-23	104 - 163	98	59 / 60	plus
Harvest21	ABC01798	556	3e-25	107 - 166	100	60 / 60	plus
Harvest35	U35_14229	476	3e-25	107 - 166	100	60 / 60	plus

Contig Sequence (476 bp)

>U35_14229 476 Hv_44K_v2
GACCACCCCTCACCTCCCCTGCTGCATCCAGCTCTTCTCTCTCACGGCCGCTCCACAGAA
TCGCCACATAGATAACCAGCCTCTAGTCTCCACTCGAGCTCTTCTCTCCCACAAGGCCAG
AACTGCTCTATCCAGACTTCAAGATCCATTGTTAATCAAGCCAATGGCGGCCAACGGCAA
CGACGGTTTGTGCGTGGCCGAGCCGCGGAGTGCTGACCCGCTCAACTGGGGGAAAGCCGC
GGCGGAGCTGTCGGGGAGCCATCTGGACGCCGTCAAGCGGATGGTGGAGGAGTACCGCAG
GCCGGTGGTGGTCATGGAGGGCGCAAGCCTGACCATCGCCCAGGTCGCGGCGGTGGCCGC
CGCCGACGGGGCCAGGGTGGAGCTCGACGAGTCCGCCCGCGGCCGCGTCAAGGAGAGCAG
CGACTGGGTCATGACCAGCATGGCCAACGGCACCGACAGCTACGGCGTCACCACCG

Homology of Contig U35_14229 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None