barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_26904_PI390587928Hv_44K_v2CTCAGGAGGAAACACACATCAGTATTCTTCTTATGGTGATTGATACCAGAGTGGTAGTAC460GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35496119592e-24617 - 67610060 / 60plus ABC07126 ABC39121 ABC40829 ABC41063 ABC49808
MLOCMLOC_39224.17453e-21201 - 25410054 / 54minus ABC07126 ABC39121 ABC41063
JLOC1JLOC1_25564.15852e-21313 - 36610054 / 54plus
Harvest21ABC410636453e-25461 - 52010060 / 60minusABC41063
Harvest21ABC391215786e-22462 - 51510054 / 54minusABC39121
Harvest35U35_438606453e-25461 - 52010060 / 60minus
Harvest35U35_430115786e-22462 - 51510054 / 54minus



Contig Sequence (645 bp)

>U35_43860 645 Hv_44K_v2
TTTTTTTTTTTTTTTTATCTTGTGCGCTTTGATAATGATCTCACTCGTAACCAAGCTGCT
TTGCTATTTCAATTTGCTCTGTAGTACCATCAATATACAATGTTCTTTCAGTTGAAGTAT
CACCAGGAGGGAAATGGAAAGGAATGACCTTGTTGTTAGCAATTTGCATCTGGAATTGCT
CAACACTAGGTTGAGGTGCATTGTACTTCCAATTAGGGATAGTGCCAAATGAGCCAGCAT
GAGCCTCTGCAAGAACATCACTTATCAACTGCTCAGCTCTGCTTATGTGGTCAGGAGTGC
CCGAAAGATCAACCAATCTTGTCTGTGACCAGGGTTGAAAATCCATGTCCCTTGTTACTT
GGATCTTTGCCCCTGACTGAAGTTGGATATGCTTTATAGTTTCTCCAGCTTTTCCAATGA
TAACACCAACCTTCCATTTGGGATATCAATCTTTTTTGTTGTACTACCACTCTGGTATCA
ATCACCATAAGAAGAATACTGATGTGTGTTTCCTCCTGAGTTCCCTTTAGCCCATATTAA
GTTACAGACTTCTACATGCTGTCTCACTGAGCCTTTCATGATTTTAGACCTCAAGTCCTC
AACTCGGCTTGTTCGCCACCTAAGCTGCCACTTGTTGTGTCTGCT



Homology of Contig U35_43860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g13130.33473e-53protein|KH domain-containing protein, putative, expressed
Brachypodium v1_2Bradi3g08410.16932e-60
Arabidopsis v10None