barSeed - Barley Seed Development Database

Probe CUST_2680_PI390587928

Source Contig U35_14237

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2680_PI390587928	Hv_44K_v2	GGTAGCCAGTAGAACTTTTATGATGTAAGTTAAAAGGGTACTGTGTGATAAGTTTTCATG	2422	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248841.1	2565	2e-24	2463 - 2522	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01803 ABC01805
MLOC	MLOC_56386.1	1437	2e-24	1094 - 1153	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01805
JLOC1	JLOC1_36461.1	1321	8e-25	1094 - 1153	100	60 / 60	plus
Harvest21	ABC01804	2041	3e-25	1941 - 2000	100	60 / 60	plus
Harvest21	ABC01805	1658	1e-23	1594 - 1653	98	59 / 60	plus	ABC01805
Harvest35	U35_41270	584	3e-25	121 - 180	100	60 / 60	minus
Harvest35	U35_14237	2527	3e-25	2423 - 2482	100	60 / 60	plus

Contig Sequence (2527 bp)

>U35_14237 2527 Hv_44K_v2
TAATTTCAGCTCCTCTTCGCCTCCACTCCGAACTCGAGCAATCCATCACCACTTCAGAAA
ACATCCAGATACGCATACACCTGCCCATCTTCTAGCTTACTTCCTTTGCATATCTCGATG
GAGTGCGATAACGGGCACGTGGCCGCCAACGGCGACGGCTTGTGCGTGGCACAGCCGGCG
CGGGCCGACCCATTGAACTGGGGCAAGGCGGCGGAGGATCTGTCCGGGAGCCATTTGGAT
GCCGTGAAGCGGATGGTCGAGGAGTACCGTAAGCCGGTGGTGACCATGGAGGGCGCCAGC
CTGACCATTGCCATGGTCGCCGCGGTGGCTGCTGGCAGCGAGACCAGGGTGGAGCTCGAT
GAGTCCGCTCGCGGCCGTGTCAAGGAGAGCAGCGACTGGGTCATGAACAGCATGATGAAC
GGCACCGACAGCTATGGTGTCACCACCGGCTTCGGCGCCACCTCTCACCGGAGGACCAAG
GAGGGCGGCGCTCTGCAGAGGGAGCTCATCAGATTCCTTAACGCTGGAGCCTTCGGCACC
GGCACCGATGGCCACGTTCTGCCTGCCGCGACGACGAGGGCGGCGATGCTCGTCCGAGTC
AATACCTTGCTGCAGGGATATTCAGGCATTCGCTTTGAGATCCTGGAGACAATTGCCACA
CTTCTCAATGCCAACGTGACACCATGCCTGCCGCTCCGGGGCACGATCACCGCGTCCGGT
GACCTCGTCCCGCTTTCCTATATTGCGGGCCTGGTAACCGGCCGCCCAAACTCGATGGCC
ATGGCTCCGGATGGCACGAAGGTTAACGCTGCAGAGGCATTTAAGATCGCCGGCATCCAG
CACGGCTTCTTTGAGCTGCAGCCCAAAGAAGGCCTTGCCATGGTTAACGGCACCGCAGTG
GGCTCTGGGCTCGCATCCATGGTGCTTTTCGAGGCTAACATCCTTAGCCTCCTTGCCGAG
GTCCTGTCGGCTGTCTTCTGTGAGGTCATGAACGGCAAGCCGGAGTACACTGACCACTTG
ACCCACAAGTTGAAGCACCACCCCGGGCAAATCGAGGCTGCCGCCATCATGGAGCACATC
CTTGAAGGTAGCTCCTACATGATACTCGCGAAGAAGCTCGGTGAGCTTGATCCATTGATG
AAGCCAAAGCAAGATAGATATGCACTCCGCACATCACCGCAGTGGCTTGGCCCTCAGATT
GAGGTCATCCGTGCTGCCACCAAGTCGATCGAGCGGGAGATCAACTCCGTCAACGATAAC
CCACTCATCGACGTCTCCCGGGGCAAGGCTATCCACGGTGGTAACTTCCAGGGCACACCC
ATCGGTGTGTCCATGGATAACACGAGGCTTGCCATTGCTGCGATCGGCAAGCTTATGTTT
GCCCAATTCTCAGAGCTAGTGAACGACTTCTACAACAACGGTCTGCCCTCCAACCTCTCT
GGCGGGCGCAACCCGAGCTTGGACTATGGCTTCAAGGGTGCCGAGATTGCCATGGCCTCG
TACTGCTCCGAACTTCAATTCTTGGGCAACCCGGTTACCAACCATGTCCAGAGCGCGGAG
CAACACAACCAAGATGTCAACTCTCTTGGTCTCATCTCCTCCAGGAAGACCGCCGAGGCC
ATTGACATATTGAAGCTCATGTCCTCGACATTCTTGGTCGCGTTGTGCCAGGCTATCGAT
CTCCGCCACCTCGAGGAGAATGTCAAGAACGCTGTCAAGAGCTGTGTGAAGACGGTGGCC
AGGAAGACACTGAGCACTGATAACAATGGCCATCTCCACAAGGCACGCTTCTGTGAGAAG
GACCTTCTGCTCACAATTGACCGTGAGGCAGTGTTCGCGTACGCAGACGACCCTTGCAGC
GTCAACTACCCACTCATGCAGAAAATGCGTGCGGTTCTTGTGGAGCACGCCTTGGCCAAT
GGTGAGGCCGAGCACGACGTGGAGACGTCAGTGTTTGCCAAGCTTGCCACGTTCGAGCAG
GAGCTCCGGGCAGTGTTGCCAACGGAGGTCGAGGCCGCCCGGAGCGCCGTGGAGAATGGC
ACTGCAGCACAGCAAAACCGTATCTCCGAATGTCGGTCGTACCCGCTCTACCGGTTCGTG
CGCAAGGAGCTTGGAACGGAGTACTTGACTGGGGAGAAGACGCGGTCTCCTGGGGAAGAG
GTGGACAAGGTGTTCGTTGCCATGAACCAAGGCAAGCACATCGACGCGCTCCTTGAGTGC
CTGAAGGAGTGGAATGGTGAGCCCCTGCCTATCTGCTGAACAGAGGATCCAGAAATGGAA
GAGTAGCGTGCTTCAAATTTCAGAAGGCTCCAGTGATGATACTATTTTTTTGTTGTAATC
TCTACAAGTTGATGTTTGCGACGTTCTTCCAGAGCTTCCAGTGCATTGCTAAAGGTTGCA
ATTGCATGACCTGGTAGTGTTGGGTAGCCAGTAGAACTTTTATGATGTAAGTTAAAAGGG
TACTGTGTGATAAGTTTTCATGATAAATATACTGGTTCCAGAAAGTAAAAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_14237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g43800.1	715	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716
Arabidopsis v10	AT2G37040.1	725	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725