barSeed - Barley Seed Development Database

Probe CUST_2677_PI390587928

Source Contig U35_14239

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2677_PI390587928	Hv_44K_v2	GTAGAATCTCTACGATGTAGGGTAAAAGGGGTACAATGTGTGATAAATATTCATGAGAAA	1975	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62322.1	2157	7e-23	74 - 133	98	59 / 60	minus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01803 ABC01805
JLOC1	JLOC1_40780.1	2223	4e-23	137 - 196	98	59 / 60	minus
Harvest21	ABC01799	2000	1e-23	1912 - 1971	98	59 / 60	plus	ABC01799
Harvest35	U35_14239	2072	3e-25	1976 - 2035	100	60 / 60	plus

Contig Sequence (2072 bp)

>U35_14239 2072 Hv_44K_v2
ACCAAGGAGGGCGGCGCTCTGCAGAGGGAGCTCATCAGATTCCTTAACGCTGGAGCCTTC
GGCACCGGCAACGACGGGCACGTTCTGCCTGCGGCGGCGACCAGAGCGGCGATGCTCGTC
CGTGTCAATACCTTGCTGCAGGGATATTCAGGCATTCGCTTTGAGATACTCGAGACGGTC
GCCACACTTCTCAACGCCAACGTGACACCATGCCTGCCGCTCCGGGGCACGATCACCGCG
TCCGGTGACCTCGTCCCGCTTTCCTATATTGCGGGCCTGGTAACCGGCCGCCCAAACTCG
ATGGCCACGGCTCCGGATGGCACGAAGGTTAACGCTGCAGAGGCATTTAAGATCGCCGGC
ATCCAGCACGGCTTCTTTGAGCTGCAGCCCAAAGAAGGCCTTGCGATGGTTAACGGCACC
GCAGTGGGCTCTGGGCTCGCATCCATGGTGCTTTTCGAGGCTAACATCCTTAGCCTCCTT
GCCGAGGTCCTGTCGGCTGTCTTCTGTGAGGTCATGAACGGCAAGCCGGAGTACACTGAC
CACTTGACCCACAAGCTGAAGCACCACCCAGGGCAAATCGAGGCTGCCGCCATCATGGAG
CACATACTCGAAGGTAGCTCCTACATGATGCTTGCGAAGAAGCTTGGAGAGCTCGACCCA
TTGATGAAGCCAAAGCAAGATAGATATGCACTCCGCACGTCGCCGCAGTGGCTTGGCCCT
CAGATTGAGGTCATCCGTGCTGCCACCAAGTCGATTGAGCGAGAGATCAACTCCGTCAAC
GACAACCCACTCATCGACGTCTCCCGTGGCAAGGCTATCCATGGTGGCAACTTCCAGGGC
ACACCCATCGGTGTGTCTATGGACAACACCAGGCTTGCCATTGCTGCGATTGGCAAGCTC
ATGTTTGCCCAATTCTCAGAGTTGGTGAACGACCTCTACAACAACGGTCTACCTTCCAAC
CTTTCCGGTGGGCGCAACCCGAGCTTGGACTATGGCTTCAAGGGTGCCGAGATTGCCATG
GCCTCGTACTGCTCTGAGCTCCAGTTCTTGGGCAACCCTGTGACCAACCATGTCCAGAGC
GCGGAGCAGCATAACCAAGATGTCAATTCTCTTGGCCTCATCTCCTCTAGGAAGACCGCC
GAGGCCATTGACATACTGAAGCTCATGTCCTCGACATTCCTGGTCGCGCTGTGCCAGGCT
ATCGACCTCCGCCACCTCGAAGAGAATGTCAAGAATGCTGTCAAGAGTTGTGTGAAGACG
GTGGCTAGGAAGACACTGAGCACCAACAGCAATGGCCATCTGCATAGCGCACGCTTCTGC
GAGAAGGACCTTCTTCTCACAATCGACCGAGAGGCGGTGTTCGCCTACGCCGACGACCCC
TGCAGCGCCAACTACCCACTCATGCAGAAGATGCGTGCAGTTCTTGTGGAGCACGCCTTG
GCCAATGGCGAGGCGGAGCGCGACGTGGAGACGTCTGTGTTTGCCAAGCTTGCCATGTTC
GAGCAGGAGCTTCGTGCAATGTTGCCAAAGGAGGTCGAGGCTGCTCGGAGTGCCGTGGAG
AACGGTACTGCCACACAACAAAACCGTATCACTGAATGCCGATCATACCCACTCTACCGG
TTTGTGCGCAAGGAGCTTGGAACAGAGTACTTGACCGGCGAGAAGACTAGGTCTCCCGGC
GAAGAAGTGGACAAGGTGTTTGTTGCTATGAACAAGGGCAAGCACATCGACGCACTGCTT
GAGTGTCTCAAGGGTTGGAACGGTGAGCCCCTGCCTATCTGCTAAGGATCAAGAACATGA
ACAGATGATAATGTGCTTCAAAGTTCAGAAGGCTTCAGATGTTCTTAGCTGATAAGTGAT
AACACTGTTTTTCCATTGGATATTCTTAAAAGTCGATGTTTTGTATTGTTCTTATAGAGC
TGCCGGGTTGTTGCCAAAAATTGCAATTGCATGCTTTGGTAGTGGTAGGTAGCCAGTAGA
ATCTCTACGATGTAGGGTAAAAGGGGTACAATGTGTGATAAATATTCATGAGAAATTTAT
GTGTCCCTTTTTTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14239 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g43800.1	715	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716
Arabidopsis v10	AT2G37040.1	725	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725