barSeed - Barley Seed Development Database

Probe CUST_25982_PI390587928

Source Contig U35_12560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25982_PI390587928	Hv_44K_v2	GATGTTGTTCGATGGTTATTTTGCAAGCTGCTCACTTGTTATATATCTGACCGTGGTATG	594	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57641.3	2148	7e-23	104 - 163	98	59 / 60	minus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862
MLOC	MLOC_57641.1	2345	7e-23	473 - 532	98	59 / 60	minus	None
MLOC	MLOC_57641.2	3588	7e-23	461 - 520	98	59 / 60	minus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
JLOC1	JLOC1_37385.1	2222	4e-23	2075 - 2134	98	59 / 60	plus
Harvest21	ABC26623	654	3e-25	595 - 654	100	60 / 60	plus
Harvest35	U35_12560	654	3e-25	595 - 654	100	60 / 60	plus
Harvest35	U35_5359	2098	3e-25	1935 - 1994	100	60 / 60	plus
Harvest35	U35_35369	715	1e-23	542 - 601	98	59 / 60	plus

Contig Sequence (654 bp)

>U35_12560 654 Hv_44K_v2
GGGAGCGGCGAGTCTACCCCAGCTCCGGCACCGGGACGACGGCGCTGCTCTCTCTCTCTC
AGCGAGGACCAAAGCACCGGCGATCCGCAGGTCTCTCGGATTGGACAAGTCATGGAGGGT
GAGCCATGGTATCCAGTTGTGTTCAAGGACAACACTATGCCTTGCAAGAAGCTCTACCTG
GTTGAATGGCAGGGGGCGTTGCTGATGGTACGGAGGGCAGTTTGGTGCCAGGTACCTGAA
CCTGGAGTGCGCGGTGAAGTTGTTGCTCGAGAGAACAGCTTTGAGGTTTTTAAGGCTGAC
TTTGAGCATTCACGGTGGGTCAAGGTGTCGGCTTTGGGGGGTTTGATGTTTCTAGGGCGA
AGGTGCTCCAGGGTTTTGTCCTTGTCTCAGTACGGGGTCCCGGATGATCACATCTTGTTC
TTGGATGATGATGAGGAGAATCGTATGGAGTATAGATATGACGAGGAGAACACTTCCTAC
GGCACCTATGACATGAGATCCGGCAGGATCCGTTCTGTTCATCCAAACATTTCCTGGAAG
CGTGGCGATGAAATGCGTCTGGCAGCATGGCTCTTCCCTCAGGACTGAAGCGGCGATGTT
GTTCGATGGTTATTTTGCAAGCTGCTCACTTGTTATATATCTGACCGTGGTATG

Homology of Contig U35_12560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g34630.1	675	7e-59	protein\|retrotransposon protein, putative, Ty1-copia subclass, expressed
Brachypodium v1_2	Bradi2g16460.1	476	4e-74
Arabidopsis v10	None