barSeed - Barley Seed Development Database

Probe CUST_2584_PI390587928

Source Contig U35_39095

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2584_PI390587928	Hv_44K_v2	TGGATTAGCTGCTTGCACACAGAACAATCACCGTATGTTGGGGTCGAAATTGCTATCACA	605	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1379.4	2883	2e-24	663 - 722	100	60 / 60	plus	ABC05171 ABC05172 ABC30081 ABC30943
MLOC	MLOC_1379.1	4383	2e-24	769 - 828	100	60 / 60	plus	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC	MLOC_1379.3	4109	2e-24	663 - 722	100	60 / 60	plus	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC	MLOC_1379.2	4030	2e-24	663 - 722	100	60 / 60	plus	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC	MLOC_1379.7	3455	2e-24	641 - 700	100	60 / 60	plus	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC	MLOC_1379.6	4187	2e-24	663 - 722	100	60 / 60	plus	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
JLOC1	JLOC1_852.1	2894	8e-25	2165 - 2224	100	60 / 60	minus
JLOC1	JLOC1_851.1	4041	8e-25	671 - 730	100	60 / 60	plus
Harvest35	U35_39095	666	3e-25	606 - 665	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_39095 666 Hv_44K_v2
ATCTCTCTCTCCCCCACCTATGGCGGGCGATCTTCCCCTCGGCCCAGATCCACCTCCGCC
TCCCTCGACCCGCTCACTTTCTCGCTCGCGCCCCCTGCCGTCCCAGGGCGATGTCGTCGT
GGTCGCCGCCGTTGCCGCCTCGCGGGGCGGAGGAGGAGGGGGACACCAGGAGCGGCGGCG
GCGCGGTGTTCAGCTACGGGGAGGCGAGGTACTGGGATGCGCGCTACATGGAGGAGGGCG
GTGCGCCCTACGACTGCTACCAGCGCTACGCCGCGCTGCGCCCCTTCGTCCGCCGCTTTG
TGCCTCCGGCCTACCGCCTCTTCATAATCGGATGCGGCTCCGCGCGTACGTCCTCCCCCT
TCCCCTCTTCCGCTCTCCTCCTCATGATTCCTCCGCATAGACGAGACTACCGCTCGCCTA
GTGCCCGAACTGGAGTAGCTGATTTGTGCTCGTGGTGGTGGTGCTTGACTTCTTGTGCAT
TTGTCTCTCTTTTCCGGAAGTAGGAATTCCTTTCCGTCTTTTCAGGTTCGGTTCAAATAC
GTGCTTGATTGTGATTTGTGAAGGGATGGGGGTGATTGGCACGGACCANCGAGCGGGTGA
TCTTTTGGATTAGCTGCTTGCACACAGAACAATCACCGTATGTTGGGGTCGAAATTGCTA
TCACAG

Homology of Contig U35_39095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None