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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_23966_PI390587928Hv_44K_v2GAGTAGGAAGGTGATAAACAGCAAACCAGAGGATCACATCTTCATCTACTACACGGATCA494GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_5276.110172e-24289 - 34810060 / 60minus ABC03366 ABC03372
MLOCMLOC_598.17093e-21389 - 4489758 / 60plus ABC03366 ABC03369 ABC03372
JLOC1JLOC1_3390.140138e-25580 - 63910060 / 60plus
JLOC1JLOC1_361.18382e-21389 - 4489758 / 60plus
Harvest21ABC033705543e-25495 - 55410060 / 60plus
Harvest21ABC0337217436e-22488 - 5479758 / 60plusABC03372
Harvest35U35_155665543e-25495 - 55410060 / 60plus
Harvest35U35_1556717476e-22488 - 5479758 / 60plus



Contig Sequence (554 bp)

>U35_15566 554 Hv_44K_v2
CCTCTAGCACTCTAGCACACGCACATGAACTCGAGGGTGACAATGGCTGCGTGGTGGGTT
TGCGGAGTCCTCCCGCTCCTGGAGGTGGCCGCGGCCGCCGCGGAGCCGCTGATCCGGCTG
CCGACGGAGAGTGGGCATGCCCCTGCCACTGTCCCTGCCCCTGCGCCTGGCCCGTCGGCG
CCGGCGGAAGAGGTGACAAAGTGGGCCGTGCTCGTCGCCGGCTCCTCCGGCTACGAGAAC
TACCGGCACCAGGCCGACGTGTGCCACGCGTACCAGATCCTGAAGAAGGGAGGCCTCAAG
GACGAGAACATTGTGGTGTTCATGTACGATGACATCGCCAACAGCCCTGAAAACCCAAGG
CGTGGAGTCGTCATCAACCATCCCAAAGGCAAAGATGTTTACCATGGTGTTCCCAAGGAC
TACACTGGTGACCAGGTCACCGCTAAGAACTTCTATGCGGTTCTCTTGGGGAACAAAACT
GCGGTTACCGGAGGGAGTAGGAAGGTGATAAACAGCAAACCAGAGGATCACATCTTCATC
TACTACACGGATCA



Homology of Contig U35_15566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g43010.24485e-68protein|vacuolar-processing enzyme precursor, putative, expressed
Brachypodium v1_2Bradi5g16960.14893e-70
Arabidopsis v10AT1G62710.14869e-61| Symbols: BETA-VPE, BETAVPE | beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=486