- Probe CUST_23646_PI390587928
- Source Contig U35_15687
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_23646_PI390587928 | Hv_44K_v2 | GTACATCATCGTCATCGGGTTCGCGAGCTGGAACCTCAACCACTTCATCAACGGCCTCAC | 141 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_49699.1 | 409 | 2e-24 | 215 - 274 | 100 | 60 / 60 | plus | ABC03684 ABC03685 ABC03686 |
MLOC | AK377149 | 518 | 7e-23 | 69 - 128 | 98 | 59 / 60 | plus | ABC03684 ABC03685 ABC03686 |
MLOC | AK249250.1 | 1071 | 7e-23 | 230 - 289 | 98 | 59 / 60 | plus | ABC03684 ABC03685 ABC03686 ABC03690 |
MLOC | AK249210.1 | 988 | 7e-23 | 209 - 268 | 98 | 59 / 60 | plus | ABC03684 ABC03685 ABC03686 ABC03690 |
MLOC | AK373439 | 921 | 7e-23 | 123 - 182 | 98 | 59 / 60 | plus | ABC03684 ABC03685 ABC03686 ABC03690 |
MLOC | MLOC_66583.1 | 993 | 7e-23 | 729 - 788 | 98 | 59 / 60 | minus | ABC03684 ABC03685 ABC03686 ABC03690 |
JLOC1 | JLOC1_31792.1 | 406 | 8e-25 | 214 - 273 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_43893.1 | 932 | 4e-23 | 677 - 736 | 98 | 59 / 60 | minus | |
Harvest21 | ABC03688 | 486 | 3e-25 | 225 - 284 | 100 | 60 / 60 | plus | |
Harvest21 | ABC03687 | 418 | 3e-25 | 142 - 201 | 100 | 60 / 60 | plus | |
Harvest21 | ABC03689 | 559 | 1e-23 | 187 - 246 | 98 | 59 / 60 | plus | |
Harvest21 | ABC03686 | 1033 | 1e-23 | 191 - 250 | 98 | 59 / 60 | plus | ABC03686 |
Harvest21 | ABC03685 | 1037 | 1e-23 | 211 - 270 | 98 | 59 / 60 | plus | ABC03685 |
Harvest21 | ABC03684 | 1099 | 1e-23 | 190 - 249 | 98 | 59 / 60 | plus | ABC03684 |
Harvest21 | ABC03683 | 961 | 1e-23 | 160 - 219 | 98 | 59 / 60 | plus | |
Harvest35 | U35_15688 | 487 | 3e-25 | 225 - 284 | 100 | 60 / 60 | plus | |
Harvest35 | U35_15687 | 419 | 3e-25 | 142 - 201 | 100 | 60 / 60 | plus | |
Harvest35 | U35_15690 | 1049 | 1e-23 | 223 - 282 | 98 | 59 / 60 | plus | |
Harvest35 | U35_15689 | 977 | 1e-23 | 187 - 246 | 98 | 59 / 60 | plus | |
Harvest35 | U35_15686 | 1100 | 1e-23 | 191 - 250 | 98 | 59 / 60 | plus |
Contig Sequence (419 bp)
>U35_15687 419 Hv_44K_v2 ACCAAATCCAATCCAGTGAGACACGCAGCTCCATCCCCATCTCGACCTCGACCGAGAAGA AGAGGAAAGAAGCTGGGCAGCAGCAATGGCGGGCGTCGGTCGCAACATGGTGGCGCCGCT GCTGGTGCTGAACCTCATCATGTACATCATCGTCATCGGGTTCGCGAGCTGGAACCTCAA CCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTA CTTCCTCGTCTTCGCCATCCTGGCCGGCGTCGTCGGCGCCGCGTCCAAGCTCGCCGGCGT GCACCACGTCCGCACCTGGCGCGGCGACAGCCTCGCCACCTCCGCGTCCTCTTCGCTGGT GGCCTGAGCCATCACCGCATTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCG
Homology of Contig U35_15687 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os07g24000.1 | 174 | 6e-53 | protein|AWPM-19-like membrane family protein, putative, expressed |
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |