barSeed - Barley Seed Development Database

Probe CUST_23645_PI390587928

Source Contig U35_15688

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23645_PI390587928	Hv_44K_v2	GTACATCATCGTCATCGGGTTCGCGAGCTGGAACCTCAACCACTTCATCAACGGCCTCAC	224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49699.1	409	2e-24	215 - 274	100	60 / 60	plus	ABC03684 ABC03685 ABC03686
MLOC	AK377149	518	7e-23	69 - 128	98	59 / 60	plus	ABC03684 ABC03685 ABC03686
MLOC	AK249250.1	1071	7e-23	230 - 289	98	59 / 60	plus	ABC03684 ABC03685 ABC03686 ABC03690
MLOC	AK249210.1	988	7e-23	209 - 268	98	59 / 60	plus	ABC03684 ABC03685 ABC03686 ABC03690
MLOC	AK373439	921	7e-23	123 - 182	98	59 / 60	plus	ABC03684 ABC03685 ABC03686 ABC03690
MLOC	MLOC_66583.1	993	7e-23	729 - 788	98	59 / 60	minus	ABC03684 ABC03685 ABC03686 ABC03690
JLOC1	JLOC1_31792.1	406	8e-25	214 - 273	100	60 / 60	plus
JLOC1	JLOC1_43893.1	932	4e-23	677 - 736	98	59 / 60	minus
Harvest21	ABC03688	486	3e-25	225 - 284	100	60 / 60	plus
Harvest21	ABC03687	418	3e-25	142 - 201	100	60 / 60	plus
Harvest21	ABC03689	559	1e-23	187 - 246	98	59 / 60	plus
Harvest21	ABC03686	1033	1e-23	191 - 250	98	59 / 60	plus	ABC03686
Harvest21	ABC03685	1037	1e-23	211 - 270	98	59 / 60	plus	ABC03685
Harvest21	ABC03684	1099	1e-23	190 - 249	98	59 / 60	plus	ABC03684
Harvest21	ABC03683	961	1e-23	160 - 219	98	59 / 60	plus
Harvest35	U35_15688	487	3e-25	225 - 284	100	60 / 60	plus
Harvest35	U35_15687	419	3e-25	142 - 201	100	60 / 60	plus
Harvest35	U35_15690	1049	1e-23	223 - 282	98	59 / 60	plus
Harvest35	U35_15689	977	1e-23	187 - 246	98	59 / 60	plus
Harvest35	U35_15686	1100	1e-23	191 - 250	98	59 / 60	plus

Contig Sequence (487 bp)

>U35_15688 487 Hv_44K_v2
ACAAGTCATCATACTCCATTCGGTTCGATTCTTGCTTGCACCAAATCCAATCCCACTCCC
ACTCTCATCGTCAATCGAGCGAGTGACACCGACAGAGCTCCATCCCCATCTCTCTCCCTC
TCTGGACCAACAACGACAAGAAGAAGAAGAAGAAGCTGGGCAGCAGCAATGGCGGGCGTC
GGTCGCAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCATC
GGGTTCGCGAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTC
GGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTGGCCGGCGTCGTCGGC
GCCGCGTCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGCGACAGCCTCGCC
ACCTCCGCGTCCTCTTCGCTGGTGGCCTGCGCCATCACCGCATTGGCGTTCGGGCTGGCG
TGCAAGG

Homology of Contig U35_15688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g24000.1	174	2e-54	protein\|AWPM-19-like membrane family protein, putative, expressed
Brachypodium v1_2	Bradi1g00600.1	180	8e-52
Arabidopsis v10	None