barSeed - Barley Seed Development Database

Probe CUST_23642_PI390587928

Source Contig U35_15689

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23642_PI390587928	Hv_44K_v2	CATGCATGTTGTACTACCGGGGTTCTTGCTAGTGTTTTATAAATGAATGGAAAATCTAAA	902	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.161	0.349	1.373	1.491	1.293	1.303
Raw	3.980	17.865	63.226	96.486	33.037	37.418

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249210.1	988	6e-24	924 - 982	100	59 / 59	plus	ABC03684 ABC03685 ABC03686 ABC03690
Harvest21	ABC03683	961	1e-24	876 - 934	100	59 / 59	plus
Harvest21	ABC03690	582	1e-23	510 - 569	98	59 / 60	plus	ABC03690
Harvest35	U35_15689	977	3e-25	903 - 962	100	60 / 60	plus
Harvest35	U35_35589	747	6e-22	684 - 737	100	54 / 54	plus

Contig Sequence (977 bp)

>U35_15689 977 Hv_44K_v2
ATTCGACTGACTCTTCCTTGCAACCAACCCAATCCCAGCACGTAGCTAAGCATCACTCGA
CCAGCGCCAATCTCCATCTCCATCTCCATCTGACCAAGACGAAGAAGGTAGCAGTAGCAG
AGCTCCATCAATGGCGGGCGTCGGTCGCAACATGGTGGCACCGCTGCTGGTGCTGAACCT
AATCATGTACATCATCGTCATCGGGTTCGCGAGCTGGAACCTCAACCACTTCATCAACGG
CATCACCAACCGCCCCGGCGTAGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGC
CATCCTTGCCGGGGTCGTCGGCGCGGCATCCAAGCTCGCCGGAGTGCACCACGTCCGTAC
CTGGCGTGGGGACAGCCTCGCCACCTCCGCCTCTTCTTCGCTGGTGGCCTGGACGATTAC
CGCCTTGGCCTTCGGGCTGGCGTGCAAGGAGATCCACGTCGGCGGGTACCGGGGGTGGCG
CCTCAGGGTGCTGGAGGCGTTCGTCATCATCCTCGCCTTCACGCAGCTCCTGTACGTGCT
TGCTCTCCACTCTGGGCTCTTCGGGAACCAGTTTGGTAATAACAATGGTGGGTATCCGGC
GGAGCACGCTTACGGCGCCGGCGTCGGTGACCACCACAACAAGGGCATGGGCACCGGCGG
CGTCGCAAGGGTCTAAATAGGATAAGACTTGGCCGTGGCAAGCGACGGGTGGATAATACG
TTGTACTGTACTAGTACGTATTTGTGTTAGTTGTGTCACGTACGGTTAGAGAGCAGAAGA
GTAGGTTGTATGCATCGTCGATCCATGGCATGGCAGTGGGGTATGTGTGTGAGCATGGCA
CGCATGTACTACTCATGGTTCCCTTCTTTTTTTAGGGGGACCTGGTATTACATACGCACG
TACATGCATGTTGTACTACCGGGGTTCTTGCTAGTGTTTTATAAATGAATGGAAAATCTA
AAAAAAAAAAAAAAAAA

Homology of Contig U35_15689 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g24000.1	174	3e-81	protein\|AWPM-19-like membrane family protein, putative, expressed
Brachypodium v1_2	Bradi1g00600.1	180	1e-80
Arabidopsis v10	AT1G04560.1	186	1e-59	AWPM-19-like family protein \| chr1:1245070-1245888 FORWARD LENGTH=186