barSeed - Barley Seed Development Database

Probe CUST_23619_PI390587928

Source Contig U35_15690

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23619_PI390587928	Hv_44K_v2	CTCCGTTCCTAAATATAAGTTTTTTAAGAGATTTCTAGTGTACTACTCCCCCTTCCTAAA	958	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249250.1	1071	2e-24	966 - 1025	100	60 / 60	plus	ABC03684 ABC03685 ABC03686 ABC03690
Harvest21	ABC03685	1037	3e-25	947 - 1006	100	60 / 60	plus	ABC03685
Harvest35	U35_15690	1049	3e-25	959 - 1018	100	60 / 60	plus

Contig Sequence (1049 bp)

>U35_15690 1049 Hv_44K_v2
ACAACCTCATCCACAAGTCATCACTCCATTCGGTTCGATTCTTGCTTGCACCAAATCCAA
TCCCACTCCCACTCTCATCGCCAATCGAGCGAGTGACACTCCATCCCCATCTCTCTCCCT
CTCTGGACCAACAACGACAAGAAGAAGAAGAAGAAAGGCAACAGCAATGGCTGGCGTTGG
TCGCAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACGTCATCGTCATCGG
GTTCGCGAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGG
CGGCAACGGCGCCACCTTCTATTTCCTCGTCTTCGCCATCCTCGCCGGCGTCGTCGGCGC
CGCATCCAAGCTCGCCGGAGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTCGCCAC
CTCCGCGTCCTCTTCGCTGGTGGCGTGGGCCATCACCGCATTGGCGTTCGGTCTCGCGTG
CAAGGAGATCCACATCGGCGGCTACCGCGGGTGGCGGCTCCGGGTGCTGGAGGCGTTCGT
CATCATCCTCGCCTTCACGCAGCTGCTCTACGTGCTTGCTCTCCACTCTGGCCTCTTCGG
GAACCAGTTCGGTAACCATGCTGGCGGTGGTGGGTATCCGGCTGAGCACGGCGGATATGG
CGCCGGCGACCCGCATAACAAGGGCATGGCCACCGGCGGCGTGGCCAGGGTCTGAAGAAT
CGGATAGATGATCTCCCCGTGGCAGCGACGGGTGGATAATAAATTGTACTGTGCTAGTAC
GTATTTGTGTTAGTTGTGTCACGTACGTACGGTGTGAGTGTACGTTCTATGCATACATGG
CAGTGGGGTGTGTGTGTGAGCACGGTAGGCATGTACTAGTACTCATGGTTCTTTTTTTTT
TTGCGGGTGATACTCATGGTTTTTTAGGGACACCAGGTACGTACATACGTACTACTCCCT
CCGTTCCTAAATATAAGTTTTTTAAGAGATTTCTAGTGTACTACTCCCCCTTCCTAAATA
TAAGTCTTTTAAGAGAAAAAAAAAAAAAA

Homology of Contig U35_15690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g24000.1	174	9e-80	protein\|AWPM-19-like membrane family protein, putative, expressed
Brachypodium v1_2	Bradi1g00600.1	180	1e-74
Arabidopsis v10	AT1G04560.1	186	5e-60	AWPM-19-like family protein \| chr1:1245070-1245888 FORWARD LENGTH=186