barSeed - Barley Seed Development Database

Probe CUST_232_PI415269222

Source Contig TA30917_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_232_PI415269222	Hv_44K_v2	GAGCTTGTGATGGTGTAAGCGAAAGGGCACAAATTTTCCTGACAAATGTTGATATTCTTG	1589	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_477.2	1167	2e-24	801 - 860	100	60 / 60	minus	ABC01795
MLOC	MLOC_477.1	1540	2e-24	897 - 956	100	60 / 60	minus	ABC01795 ABC01802
MLOC	MLOC_477.3	4582	2e-24	746 - 805	100	60 / 60	minus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01802 ABC01803 ABC01805

Contig Sequence (1649 bp)

>TA30917_4513 1649 Hv_44K_v2
GCACGAGGTCCAGCACGGCTTCTTCGAGCTACAGCCCAAGGAAGGCCTTGCTATGGTTAA
TGGCACGGCTGTGGGCTCTGGCCTCGCATCCATTGTTCTCTTTGAAGCGAACATACTTGG
TGTCCTTGCTGAAGTTTTGTCGGCCGTGTTCTGTGAAGTGATGAACGGCAAGCCAGAGTA
CACCGATCACCTGACACACAAGTTGAAGCACCACCCCGGACAGATCGAGGCTGCGGCCAT
CATGGAGCACATCCTAGAGGGCAGCTCCTACATGATGCTCGCAAAGAAACTTGGTGAGCT
CGACCCATTGATGAAGCCGAAGCAAGACAGATATGCTCTTCGCACGTCCCCGCAATGGCT
CGGACCCCAAATTGAGGTCATCCGTGCAGCGACAAAGTCCATCGAGAGGGAGATCAACTC
TGTCAATGACAACCCACTCATTGACGTATCTCGTGGAAAGGCAATCCATGGCGGCAACTT
CCAGGGCACGCCCATCGGTGTGTCCATGGACAACACCAGACTTGCCATTGCTGCGATCGG
CAAGCTCATGTTTGCCCAGTTCTCGGAGCTAGTGAATGACCTCTACAACAATGGTTTGCC
CTCCAACCTCTCTGGTGGCCGCAACCCAAGCCTGGACTATGGCTTCAAGGGTGCCGAGAT
CGCCATGGCTTCATACTGCTCGGAGCTCCAATTCTTGGGCAACCCAGTGACCAACCATGT
CCAGAGTGCGGAGCAACACAATCAAGATGTTAACTCCCTCGGATTAATCTCGGCCCGGAA
GACTGCCGAGGCCATCGACATTCTGAAGCTCATGTCCTCTACATTTTTGGTTGCGTTGTG
CCAAGCCATCGACCTACGCCACCTCGAGGAGAATGTCAAGAACGCCGTCAAGAATTGTGT
CACAAGAGTGGCCAGGAAGACCCTGATCACAAATGGCATGGGCGGCCTTCACAACGCGCG
TTTTTGTGAGAAGGACCTGCTTCAAACAATCGACCGCGAGGCGGTGTTTGCATACGCGGA
CGACCCTTGCAGCGCCAACTACCCTCTCATGAAGAAGATGCGTGCGGTGTTGGTGGAGCA
TGCCTTGGCCAACGGTGAGGCCGAGCACAACGTGGAGACCTCGGTGTTTGCCAAGGTTGC
CACATTCGAGCAGGAGCTCTACGCGGCACTGCCTCAGGAGGTTGAGGCTGCTAGAGGTGC
GGTGGAGAATGGCACCGCTGCAGAACCGAACCGTATCACTGACTGCCGATCGTACCCTCT
ATACCGGTTCGTGCGCGAGGAGCTGGGAACGGTGTACTTGACAGGAGAGAAGACACGGTC
ACCCGGGGAGGAGGTGGACAAGGTGTTTGTTGCCATGAACCAGGGCAAGCACATCGACGC
GCTGCTGGAATGCCTCAAGGAGTGGAATGGCGAGCCTCTGCCTATCTGCTAAACAAGGAG
ATGAAGAGAAGATAATGCTGTGCTTCAGAACTCTGAAAGGCTCCACATGTTCTAAATTGA
CAATACTTGTGTTCGATTTCATTTTTTCCCTCTCCTAATATGTTGCAAAGATTGCACTCT
GCAATACTTGTGGCGCCACGTAGCAACTAGAGCTTGTGATGGTGTAAGCGAAAGGGCACA
AATTTTCCTGACAAATGTTGATATTCTTG

Homology of Contig TA30917_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g43800.1	715	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716
Arabidopsis v10	AT2G37040.1	725	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725