barSeed - Barley Seed Development Database

Probe CUST_229_PI415269222

Source Contig TA30893_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_229_PI415269222	Hv_44K_v2	ACACCAGCTAGTTCACCTGTTTAGAACTACTTCTCTGCATATCTCGATGGAGTGCGAGAA	122	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357761	2712	2e-24	134 - 193	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01805
MLOC	MLOC_22224.1	484	2e-24	118 - 177	100	60 / 60	minus	ABC01800
JLOC1	JLOC1_15409.1	370	8e-25	118 - 177	100	60 / 60	minus
Harvest21	ABC01800	2576	3e-25	123 - 182	100	60 / 60	plus	ABC01800
Harvest35	U35_14236	2576	3e-25	123 - 182	100	60 / 60	plus

Contig Sequence (943 bp)

>TA30893_4513 943 Hv_44K_v2
CAGAGCTTCATCTGCAGCTACAGCTCCTCTTCAACACAAGTCTTTCTTCAAGACACAGAT
CAATCCAGATACACATACACCTGCCGACGTCTAGCTAGCCTACTTTCAGAATCCAGACAC
ATACACCAGCTAGTTCACCTGTTTAGAACTACTTCTCTGCATATCTCGATGGAGTGCGAG
AACGCACACGTTGCCGCCAACGGCGATGGCCTGTGCGTGGCACAGCCGGCGCGGGCCGAC
CCCCTCAACTGGGGCAAGGCGGCGGAGGAGCTGTCCGGGAGCCATTTGGATGCCGTGAAG
CGGATGGTGGAGGAGTACCGTAAGCCGGTGGTGACCATGGAGGGCGCCAGCCTGACCATC
GCCATGGTCGCCGCGGTGGCTGCCGGCAACGACACCAGGGTGGAGCTCGATGAGTCCGCC
CGCGGCCGCGTCAAGGAGAGCAGCGACTGGGTCATGAACAGCATGATGAACGGCACCGAC
AGCTATGGTGTCACCACCGGCTTCGGCGCCACCTCTCACCGGAGGACCAAGGAGGGCGGC
GCTCTGCAGAGAGAGCTCATCCGATTCCTTAACGCCGGAGCCTTCGGCACCGGCACCGAT
GGCCACGTTCTGCCTGCCGCGACGACGAGGGCGGCGATGCTCGTCCGAGTAAATACCTTG
CTGCAGGGATATTCAGGCATTCGCTTTGAGATCCTGGAGACGATTGCCACACTTCTCAAT
GCCAACGTGACACCATGCCTGCCGCTCCGGGGCACGATCACCGCGTCTGGTGACCTCGTA
CCGCTTTCGTACATTGCGGGCCTGGTCACCGGCCGCCCAAACTCCGTGGCAACCGCTCCA
GATGGCACGAAGGTTAATGCCGCCGAGGCATTTAAGATCGCCGGCATCCAGCATGGCTTC
TTCGAGCTGCAGCCCAAGGAAGGCCTTGCCATGGTGAATGGCA

Homology of Contig TA30893_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43800.1	715	2e-156	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716	3e-161
Arabidopsis v10	AT2G37040.1	725	2e-108	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725