barSeed - Barley Seed Development Database

Probe CUST_228_PI415269222

Source Contig TA30890_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_228_PI415269222	Hv_44K_v2	GGTAGTGTTGGGTAGCCAGTAGAACTTTTCTTATTTAAGTTATAAAAGGGTACAGTGTGT	639	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357761	2712	2e-24	2474 - 2533	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01805
MLOC	MLOC_79728.2	2135	2e-24	2021 - 2080	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01805
MLOC	MLOC_79728.1	2138	2e-24	1897 - 1956	100	60 / 60	plus	ABC01795 ABC01797 ABC01799 ABC01800 ABC01805
JLOC1	JLOC1_53094.1	2327	8e-25	1903 - 1962	100	60 / 60	plus
Harvest21	ABC01800	2576	3e-25	2463 - 2522	100	60 / 60	plus	ABC01800
Harvest21	ABC42086	331	1e-23	55 - 114	98	59 / 60	minus
Harvest35	U35_14236	2576	3e-25	2463 - 2522	100	60 / 60	plus

Contig Sequence (735 bp)

>TA30890_4513 735 Hv_44K_v2
CCACAACGGCACGTTTCTGTGAGAAGGACNTTCTGCTCACAATTGACCGTGAGGCGGTAT
TCGCATACGCAGAATGACCCATGCAGCGCGAACTACCCCACTCATGCAGAAGATGCGTGC
AGTGCTTGTGGAGCACGCCTTGGCCAATGGTGAGGCCGAGCACGACGTAGAGACGTCAGT
GTTTGCCAAGCTTGCCACGTTCGAGCAGGAGGTCCGTGCAGTGCTGCCAAAGGAGGTCGA
GGCCGCCAGGAGCGCCGTGGAGAATGGCACTGCCGCACAGCAAAACCGTATCACGGAATG
CCGGTCGTACCCGCTCTACCGGTTCGTGCGCAAGGAGCTTGGAACAGAGTACTTGACTGG
AGAGAAGACGAGGTCTCCTGGGGAAGAAGTGGACAAGGTGTTCGTTGCCATGAACCAAGG
CAAGCACATCGACGCACTTCTTGAGTGCCTCAAGGAGTGGAATGGTGAGCCCCTGCCTAT
TTGCTGAACAGAGGATTGAGAAATGGAAGGGTAGTGTGCTCAGATTTCTGAAAGATCCAG
TGATAATACCGTTTTTTCGTTATATTATGTAAAAGTTGATGTTTGCAATGTTCTTCCAGA
GCTGGCAATGCATTGCTAAAGATTGCAATTGCATGACTTGGTAGTGTTGGGTAGCCAGTA
GAACTTTTCTTATTTAAGTTATAAAAGGGTACAGTGTGTATAAGTTTGATGATAAATATA
CTGGTTCAAGAAAGT

Homology of Contig TA30890_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43800.1	715	2e-72	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716	1e-75
Arabidopsis v10	AT2G37040.1	725	2e-54	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725